RNA id: TU129481


Basic Information

Item Value
RNA id TU129481
length 211
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G113278
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11375950 ~ 11376160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagacctGGGTTAAACACTACTTAAAATCTTTCAAATACCTTTTGAGTGTTTTCTCTAGCCTTCCTAGAGAGCCAGCTGTGTGGGGTTTATTGTTTTGGCACCTTTTCCTATTGGTCCGTTAAGCCAGGCAAGCTGaatgaaatgatttcaaatagtagttGAACCCAGGTGGTGGACAGACACCTGAGCCCAGGCTGTCTAAACTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129443 lncRNA upstream 2953 11371641 ~ 11372997 (+) False soga3a
TU129444 lncRNA upstream 2953 11371641 ~ 11372997 (+) True soga3a
TU129479 lncRNA upstream 7850 11361312 ~ 11368100 (+) True G113276
TU129459 lncRNA upstream 38682 11336514 ~ 11337268 (+) False G113265
TU129461 lncRNA upstream 38682 11336514 ~ 11337268 (+) False G113265
TU129482 lncRNA downstream 2975 11379135 ~ 11379439 (+) True G113279
TU129486 lncRNA downstream 7938 11384098 ~ 11384386 (+) True G113281
TU129488 lncRNA downstream 14676 11390836 ~ 11391583 (+) True G113282
TU129493 lncRNA downstream 39348 11415508 ~ 11415786 (+) True G113286
TU129516 lncRNA downstream 46003 11422163 ~ 11422955 (+) True G113292
XM_036937965.1 mRNA upstream 2950 11328026 ~ 11373000 (+) False soga3a
XM_036937970.1 mRNA upstream 2950 11328026 ~ 11373000 (+) False soga3a
XM_036937958.1 mRNA upstream 2950 11328029 ~ 11373000 (+) False soga3a
XM_036937962.1 mRNA upstream 2950 11328032 ~ 11373000 (+) False soga3a
XM_036937987.1 mRNA upstream 51143 11307920 ~ 11324807 (+) False LOC110520740
XM_036938002.1 mRNA downstream 16782 11392942 ~ 11397308 (+) True echdc1
XM_036937994.1 mRNA downstream 26783 11402943 ~ 11413713 (+) True fbxo43
XM_036938029.1 mRNA downstream 40046 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 40046 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 40046 11416206 ~ 11458431 (+) False LOC110510416
TU129360 other upstream 102950 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 103053 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 132881 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 549887 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1599499 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 38771 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 101816 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 332443 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1344248 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1344570 12720730 ~ 12721315 (+) True G114244

Expression Profile