RNA id: TU129482


Basic Information

Item Value
RNA id TU129482
length 305
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G113279
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11379135 ~ 11379439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTCCTAGAGTCTGGAATGACTGGGGTAGGGCAGAGTCCCAGAGTCTGGAATGACTGGGATTGGGCAGAGTCCCAGAGTCTGGAACGACTGGGATAGGGCAGAGTCCCAGAGTCTGGAACGACTGGGATAGAGCAGAGTCCTAGAGTCTGGAACGACTGGGATAGGGCAGAGTCCCAGAGTCTGGAACGACTGGGATAGGGCAGAGTCCCAGAGTCTGGAACGACTGGGATAGGGCAGAGTCCCAGAGTCTGGAATGACTGGGATAGGGCAGAGTCCCAGAGTCTGGAAGGACTGGGATAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129481 lncRNA upstream 2975 11375950 ~ 11376160 (+) True G113278
TU129443 lncRNA upstream 6138 11371641 ~ 11372997 (+) False soga3a
TU129444 lncRNA upstream 6138 11371641 ~ 11372997 (+) True soga3a
TU129479 lncRNA upstream 11035 11361312 ~ 11368100 (+) True G113276
TU129461 lncRNA upstream 41867 11336514 ~ 11337268 (+) False G113265
TU129486 lncRNA downstream 4659 11384098 ~ 11384386 (+) True G113281
TU129488 lncRNA downstream 11397 11390836 ~ 11391583 (+) True G113282
TU129493 lncRNA downstream 36069 11415508 ~ 11415786 (+) True G113286
TU129516 lncRNA downstream 42724 11422163 ~ 11422955 (+) True G113292
TU129539 lncRNA downstream 68163 11447602 ~ 11448392 (+) False G113305
XM_036937965.1 mRNA upstream 6135 11328026 ~ 11373000 (+) False soga3a
XM_036937970.1 mRNA upstream 6135 11328026 ~ 11373000 (+) False soga3a
XM_036937958.1 mRNA upstream 6135 11328029 ~ 11373000 (+) False soga3a
XM_036937962.1 mRNA upstream 6135 11328032 ~ 11373000 (+) False soga3a
XM_036937979.1 mRNA upstream 54331 11307931 ~ 11324804 (+) True LOC110520740
XM_036938002.1 mRNA downstream 13503 11392942 ~ 11397308 (+) True echdc1
XM_036937994.1 mRNA downstream 23504 11402943 ~ 11413713 (+) True fbxo43
XM_036938029.1 mRNA downstream 36767 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 36767 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 36767 11416206 ~ 11458431 (+) False LOC110510416
TU129360 other upstream 106135 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 106238 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 136066 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 553072 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1602684 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 35492 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 98537 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 329164 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1340969 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1341291 12720730 ~ 12721315 (+) True G114244

Expression Profile