RNA id: TU129492


Basic Information

Item Value
RNA id TU129492
length 248
RNA type TUCP
GC content 0.35
exon number 1
gene id G113285
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11414931 ~ 11415178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaactaaaaagatttgacatgggtcccgagatcctcagaaggttctacagctgcaccatcgagagcatcctgaccggttgcatcactgcctggtacggcaattgttCGGCCTctaaccgcaaggcacttcagagggtagtgtgtacggcccagtacatcactggggccaagcttcctgccatccaggacctctacaccaggcggtgtcagaggaaggccctacaaatggtcaaagactccagccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129488 lncRNA upstream 23348 11390836 ~ 11391583 (+) True G113282
TU129486 lncRNA upstream 30545 11384098 ~ 11384386 (+) True G113281
TU129482 lncRNA upstream 35492 11379135 ~ 11379439 (+) True G113279
TU129481 lncRNA upstream 38771 11375950 ~ 11376160 (+) True G113278
TU129443 lncRNA upstream 41934 11371641 ~ 11372997 (+) False soga3a
TU129493 lncRNA downstream 330 11415508 ~ 11415786 (+) True G113286
TU129516 lncRNA downstream 6985 11422163 ~ 11422955 (+) True G113292
TU129539 lncRNA downstream 32424 11447602 ~ 11448392 (+) False G113305
TU129540 lncRNA downstream 32424 11447602 ~ 11448392 (+) True G113305
TU129494 lncRNA downstream 36193 11451371 ~ 11459325 (+) False LOC110510416
XM_036937994.1 mRNA upstream 1218 11402943 ~ 11413713 (+) True fbxo43
XM_036938002.1 mRNA upstream 17623 11392942 ~ 11397308 (+) True echdc1
XM_036937965.1 mRNA upstream 41931 11328026 ~ 11373000 (+) False soga3a
XM_036937970.1 mRNA upstream 41931 11328026 ~ 11373000 (+) False soga3a
XM_036937958.1 mRNA upstream 41931 11328029 ~ 11373000 (+) False soga3a
XM_036938029.1 mRNA downstream 1028 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 1028 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 1028 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA downstream 1028 11416206 ~ 11458431 (+) False LOC110510416
XR_005035111.1 mRNA downstream 884361 12299539 ~ 12299957 (+) False LOC110511179
TU129360 other upstream 141931 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 142034 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 171862 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 588868 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1638480 9774203 ~ 9776451 (+) True LOC118937659
TU129561 other downstream 62798 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 293425 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1305230 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1305552 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1347054 12762232 ~ 12762827 (+) True G114263

Expression Profile