RNA id: TCONS_00028123


Basic Information

Item Value
RNA id TCONS_00028123
length 445
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_014112
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29303847 ~ 29333867 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttttatttatttctttgtgtcTACTAGAAGAAAAACACTGACATCCTTGCATTCGCGTAGCGATGCGCATCAGTATTAGGACGTCCACGTAGTTTCCCCTCGAGTGTTCGAAGTTGCTGGAATTTAAAGGGTGGAGAATGAAGCGGCGCAATGCGGACTGCAGCAAACTCCGTCGCCCGTTGAAACGGAACCGAATCACCGAGGGTATTCACAGCAGTGCTGAAAGGAGCATGCGCTCTGAACTCGGCCAGCTTCGACAGGAAAATGAGCTGCTGCAGAACAAACTCCATAATGCTGTGCAAGCCAAGCAGAAGGACAAGCAAACCATTGTGCAGCTGGAGAAGCGGCTCAAGGCGGAACAGGAAGCTCGAGCCGCAGTGGAAAAGCAGCTtgcagaagaaaagaaaagaaagaagatgGAAGAGGCCACAGCCGCACGTGCT

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0023041 neuronal signal transduction biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1097 Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in endoplasmic reticulum; membrane; and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane. Orthologous to human MACO1 (macoilin 1).

Ensembl:

ensembl_id ENSDART00000142694

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029722 lncRNA upstream 196153 29105935 ~ 29107694 (+) True XLOC_014110
TCONS_00029942 lncRNA upstream 479457 28814591 ~ 28824390 (+) False XLOC_014109
TCONS_00029943 lncRNA upstream 479457 28814619 ~ 28824390 (+) True XLOC_014109
TCONS_00028121 lncRNA upstream 479533 28803429 ~ 28824314 (+) False XLOC_014109
TCONS_00028120 lncRNA upstream 485312 28803429 ~ 28818535 (+) False XLOC_014109
TCONS_00029944 lncRNA downstream 138234 29459117 ~ 29489898 (+) False XLOC_014114
TCONS_00029946 lncRNA downstream 138234 29459117 ~ 29586042 (+) False XLOC_014114
TCONS_00029945 lncRNA downstream 138234 29459117 ~ 29586042 (+) False XLOC_014114
TCONS_00029947 lncRNA downstream 138234 29459117 ~ 29586739 (+) False XLOC_014114
TCONS_00029948 lncRNA downstream 138234 29459117 ~ 29601454 (+) False XLOC_014114
TCONS_00028116 mRNA upstream 969692 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028113 mRNA upstream 970007 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028115 mRNA upstream 983708 28291376 ~ 28320139 (+) False XLOC_014108
TCONS_00028112 mRNA upstream 1013634 28284120 ~ 28290213 (+) True XLOC_014107
TCONS_00028111 mRNA upstream 1041871 28256076 ~ 28261976 (+) True XLOC_014105
TCONS_00028125 mRNA downstream 16906 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028126 mRNA downstream 477181 29798064 ~ 29800205 (+) False XLOC_014116
TCONS_00028127 mRNA downstream 477223 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028128 mRNA downstream 487588 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028129 mRNA downstream 487816 29808699 ~ 29818648 (+) False XLOC_014117
TCONS_00028122 other upstream 100590 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 969683 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 972750 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 987894 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028109 other upstream 1160593 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028134 other downstream 533366 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 538153 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 1197572 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 1310060 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 1558905 30879788 ~ 30882456 (+) True XLOC_014131

Expression Profile

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