RNA id: TU129540


Basic Information

Item Value
RNA id TU129540
length 539
lncRNA type intronic
GC content 0.52
exon number 3
gene id G113305
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11447602 ~ 11448392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGGGCCTTGGTAATCTGGTATTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129516 lncRNA upstream 24647 11422163 ~ 11422955 (+) True G113292
TU129493 lncRNA upstream 31816 11415508 ~ 11415786 (+) True G113286
TU129488 lncRNA upstream 56019 11390836 ~ 11391583 (+) True G113282
TU129486 lncRNA upstream 63216 11384098 ~ 11384386 (+) True G113281
TU129482 lncRNA upstream 68163 11379135 ~ 11379439 (+) True G113279
TU129494 lncRNA downstream 2979 11451371 ~ 11459325 (+) False LOC110510416
TU129495 lncRNA downstream 2979 11451371 ~ 11459325 (+) False LOC110510416
TU129496 lncRNA downstream 2979 11451371 ~ 11459325 (+) False LOC110510416
TU129497 lncRNA downstream 2979 11451371 ~ 11459325 (+) False LOC110510416
TU129541 lncRNA downstream 3198 11451590 ~ 11451990 (+) False LOC110510416
XM_036937994.1 mRNA upstream 33889 11402943 ~ 11413713 (+) True fbxo43
XM_036938002.1 mRNA upstream 50294 11392942 ~ 11397308 (+) True echdc1
XM_036937970.1 mRNA upstream 74602 11328026 ~ 11373000 (+) False soga3a
XR_005035111.1 mRNA downstream 851147 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 1023848 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1113945 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1113951 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1113965 12562357 ~ 12616197 (+) False LOC110513835
TU129492 other upstream 32424 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 174602 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 174705 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 204533 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 621539 10811518 ~ 10826063 (+) False G112697
TU129561 other downstream 29584 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 260211 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1272016 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1272338 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1313840 12762232 ~ 12762827 (+) True G114263

Expression Profile