RNA id: TU129553


Basic Information

Item Value
RNA id TU129553
length 2370
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G113311
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11469788 ~ 11524208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACAATATATTATCCATGTAGACCAGGTGGGGGTCCAACTCGTTCCACGGAGGGCCTGGCGTCTGCAGGTTTTAGGTTCTTCCTttcagttaagacctagacaaccaggtgagggtgaGTTCTTGACTAATTAGTGACctttaattcatcaatcaagtacaaaggggaggagggagaaacccctcagacactcggccctccgtggaatgggGTTGGACACCTGATCCAGACCATCAAAAAGCATCAAGAGTACAAAAACTGTTTTTATATTCCATAAAGCTGCGTTTGAACAGAATTTATAACAAGGTAATGATCTTGGGCATGAACTTAAAATACACAGAACTAAACGATTAGATGTTTAAACGTCTtctagaaaacaaaaacaaaaaaacactgaAAAGCAACAAATCCCACAACCATATTTTGGTGGACAGATATGAACCATTTCTATATTCCTGAGCGTTCGTCCGACTCGTCCGACACCGCGACCCGGTCAGAGAGGCTCTCGGCATTAAGAGCTTTAAACAGCTCAGTTACTCAGGAATAAAGAGCTCGGAGACACTCGGTTAAGGACAATATGACGACGAGTGAAATGACCTAATGGCAACCTATTTCCAACACAGGGGCCTATGGGGCCtgggctaaagtagtgcactatgtagggattagggtggCATTGGTTCCTGaacctatagtagtgcactatatagggaatagggtggcattgggtcctggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGgttcctggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattatGGTGGCATTGgttcctggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggcattgggtcctggtctatagtagtgcactatatagggattagggtgggtcctggtctatagtagtgcactatgtagggattagggtggcattgggtcctggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGGTTCctgggtctatagtagtgcactatgtagggattagggtggCATTGGGTCctgggtctatagtagtgcactatatagggattagggtgggtcctggtctatagtagtgcactatgtagggattagggtgggtcctggtctatagtagtgcactatgtagggattagggtgggtcctggtctatagtagtgcactatgtagggattagggtgggtcctggtctatagtagtgcactatgtagggattagggtgggtcctggtctatagtagtgcactatgtagggaatagggtggcatttggagCGTACTGTAGCCCCTCCAGTCTCCTCGACATTAGTGTCCACTGCCACAGGTGTTTTATTGAAATGTAAATCAAAGTTGAAACCCTCTTCCCTTGTTCTATGAGAGGGGGAACTGTTTCTTAATGCACAGAGGACATTACACCTTAAAGGCAGTTTGTGGATGTACAACCTAAAAGAGAGAGtacaacaggtgtgtgtgtgtctgtgtcagggTCTCtgtaaaggtgtgtgtgtctgtgtcagggTCTctgtaaaggtgtgtgtgtgtgagtgtgtgtcagggtctctgtaaaggtgtgtgtgtgtgtatgtataggtGTGTCTctgtaaaggtgtgtgtgtgtacaggtgtgtctCTGTACGAGTGTGTGTCAGGGTCTCTGTAaaggtgtgtgtacaggtgtgtctCTGTACGAGTGTGTGTCAGGGTCTctgtaaaggtgtgtgtgtgtgtgtgtgtgtacaggtgtgtctCTGTAAAGCTGTGTGTCAGTGGAAGCCGATGCGCAGCGCCTTGTTCTTGACCATGGTGAACTTGGAGACGAAGACGGCGGCGTGGGCGGGGCTGACCAGGTAACGGTAGGTCTTGGTGACGGCGGGCGGAGGCTCGGCCGGGGTGATGGGAGGAGCCTGCTGGAGGGACGAGGCCGACGGGGAGAGGAACGCAGACGCACGAGTCACATAGTCCACCAGGCGACCATACTGCTGCTCTGACAACCACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129494 lncRNA upstream 10463 11451371 ~ 11459325 (+) False LOC110510416
TU129495 lncRNA upstream 10463 11451371 ~ 11459325 (+) False LOC110510416
TU129496 lncRNA upstream 10463 11451371 ~ 11459325 (+) False LOC110510416
TU129497 lncRNA upstream 10463 11451371 ~ 11459325 (+) False LOC110510416
TU129507 lncRNA upstream 13934 11452796 ~ 11455854 (+) True G113288
TU129579 lncRNA downstream 25401 11497712 ~ 11498170 (+) True G113323
TU129587 lncRNA downstream 35128 11507439 ~ 11510358 (+) False G113328
TU129588 lncRNA downstream 35128 11507439 ~ 11511358 (+) True G113328
TU129594 lncRNA downstream 53415 11525726 ~ 11526083 (+) True G113334
TU129602 lncRNA downstream 72145 11544456 ~ 11545199 (+) False G113339
XM_036938016.1 mRNA upstream 11357 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 11357 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 11357 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 17872 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 56075 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 827228 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 999929 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1090026 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1090032 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1090046 12562357 ~ 12616197 (+) False LOC110513835
TU129492 other upstream 54610 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 196788 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 196891 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 226719 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 643725 10811518 ~ 10826063 (+) False G112697
TU129561 other downstream 5665 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 236292 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1248097 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1248419 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1289921 12762232 ~ 12762827 (+) True G114263

Expression Profile