RNA id: TU130344


Basic Information

Item Value
RNA id TU130344
length 1529
lncRNA type intronic
GC content 0.45
exon number 4
gene id G113806
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11536833 ~ 11539732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTAACACTATCCTCTAAcaccatcctctaactaacaccatcctctaactaacaccCTCCTCTAACTAACATCGTCCTCTAACTAACACCGTCCTCTAACACCGTCCTCTAACTAACACCGTCCTCTAACTAACACCGTCCTCTAACTAACACCGTCCTCTAACTAACACGATCCTCTAAcaccatcctctaactaacaccatcctctaactaataccatcctctaactaacatcgtcctctaactaacaccatcctctaacaccatcctctaactaacaccgtcctctaacaccatcctctaactaacaccatcctctaacaccatcctctaactaacaccgTCCTCTAACTAATaccatcctctaactaacaccgtcctctaactaacaccatcctctaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaTCGTCCTCTAACTAACACCGTCCTCTAACACCGTCCTCTAACTAACACCGTCCTCTAACTAACACCATCCTCTAACTAATaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccgTCCTCTAACTAACACCGTCCTCTAACTAACACCGTCCTCTAACTAAAACCGTCCTCTAACTAAcaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccgtcctctaactaacaccgtcctctaactaacaccatcctctaactaacaccgtcctctaactaacaccatcctctaactaacaccgtcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccgtcctctaactaacaccgtcctctaactaacaccatcctctaacaccatcctctaacaccatcctctaactaacatcatcctctaactaacaccatcctctaacaccatcctctaactaacatcatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccctcctctaactaacaccatcctctaactaacaccatcctctaactaacaccatcctctaactaacaccgtcctctaactaacaccgtcctctaactaacaccatcctctaacaccatcctctaactaacaccatcctctaacaccatcctctaactaacaccatcctctaacaccatcctctaactaacaccatCCTCTAATTAACACCCTCCTCTAACTAAcaccatcctctaactaacaccatcctctaactaacaccctcctctaactaacaccatcctctaacaccgtcctctaactaacaccgtcctctaactaacaccgtcctctaactaacaccgtcctctaactaacaccttcctctaactaacaccgtcctctaactaacaccatcctctaactaacaccgTCCTCTAACTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130225 lncRNA downstream 12625 11469765 ~ 11524208 (-) True G113755
TU130338 lncRNA downstream 19180 11517109 ~ 11517653 (-) True G113800
TU130331 lncRNA downstream 35053 11501385 ~ 11501780 (-) True G113794
TU130327 lncRNA downstream 42802 11493536 ~ 11494031 (-) True G113790
TU130325 lncRNA downstream 44233 11492331 ~ 11492600 (-) True G113789
TU130347 lncRNA upstream 6298 11546030 ~ 11546430 (-) False LOC110513475
TU130358 lncRNA upstream 25656 11565388 ~ 11565829 (-) True G113816
TU130360 lncRNA upstream 33932 11573664 ~ 11575600 (-) True G113818
TU130369 lncRNA upstream 79488 11619220 ~ 11619517 (-) True G113825
TU130370 lncRNA upstream 80239 11619971 ~ 11620339 (-) True G113826
XM_036938010.1 mRNA downstream 133971 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 275324 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 275324 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 368195 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 477360 11058984 ~ 11059473 (-) False LOC118937688
XM_036938060.1 mRNA upstream 5358 11545090 ~ 12290710 (-) False LOC110513475
XM_036938054.1 mRNA upstream 6054 11545786 ~ 12290710 (-) False LOC110513475
XR_005035107.1 mRNA upstream 44476 11584208 ~ 11585455 (-) True LOC118937712
XR_005035106.1 mRNA upstream 45827 11585559 ~ 11586577 (-) True LOC118937710
XR_005035110.1 mRNA upstream 419547 11959279 ~ 11960863 (-) True LOC118937716
TU130157 other downstream 184092 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 184092 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 211221 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 224175 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 318679 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 86803 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1044295 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1070937 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1168095 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1195582 12735314 ~ 12739157 (-) True G114442

Expression Profile