RNA id: TU129613


Basic Information

Item Value
RNA id TU129613
length 580
lncRNA type intronic
GC content 0.47
exon number 2
gene id G113343
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11547535 ~ 11548604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacttcctgtctgtctgtggtgacgACTCCACTAACTGGatcacttcctgtctgtctgtggtgacaACTCCACTAACTGGatcacttcctgtctgtctgtggtgacaACTCCACTAACTGGatcacttcctgtctgtctgtggtgacgACTCCACTAACTGGatcacttcctgtctgtctgtgatgacGACTCCACTACCTGGatcacttcctgtctgtctgtggtgacgACTCCACTACCTGGATcaattcctgtctgtctgtggtgacgACTCCACTAACTGGATAGGAAACAGGATGTAGTTCTCAGACTAGTGTTCCCGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTAAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGTGTGTCATTCAGCTGTCTCTTGATAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129602 lncRNA upstream 2336 11544456 ~ 11545199 (+) False G113339
TU129604 lncRNA upstream 2622 11544456 ~ 11544913 (+) True G113339
TU129594 lncRNA upstream 21452 11525726 ~ 11526083 (+) True G113334
TU129588 lncRNA upstream 36177 11507439 ~ 11511358 (+) True G113328
TU129587 lncRNA upstream 37177 11507439 ~ 11510358 (+) False G113328
TU129615 lncRNA downstream 2942 11551546 ~ 11552270 (+) True G113344
TU129622 lncRNA downstream 8921 11557525 ~ 11558379 (+) False G113348
TU129621 lncRNA downstream 9242 11557846 ~ 11558379 (+) True G113348
TU129624 lncRNA downstream 15403 11564007 ~ 11564528 (+) True G113350
TU129607 lncRNA downstream 16706 11565310 ~ 11565683 (+) False G113340
XM_036938016.1 mRNA upstream 89104 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 89104 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 89104 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 95619 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 133822 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 750935 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 923636 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1013733 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1013739 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1013753 12562357 ~ 12616197 (+) False LOC110513835
TU129561 other upstream 64794 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 132357 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 274535 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 274638 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 304466 11240732 ~ 11243069 (+) False fbxo32
TU129672 other downstream 159999 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1171804 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1172126 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1213628 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1400756 12949360 ~ 12964930 (+) True G114323

Expression Profile