RNA id: TU129621


Basic Information

Item Value
RNA id TU129621
length 371
lncRNA type intronic
GC content 0.44
exon number 2
gene id G113348
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11557525 ~ 11558379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCCAGTCTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAACCAGTCAGTCTCTATCCCAGGAGGTATGTAGGGTAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129615 lncRNA upstream 5576 11551546 ~ 11552270 (+) True G113344
TU129613 lncRNA upstream 9242 11547535 ~ 11548604 (+) True G113343
TU129602 lncRNA upstream 12647 11544456 ~ 11545199 (+) False G113339
TU129604 lncRNA upstream 12933 11544456 ~ 11544913 (+) True G113339
TU129594 lncRNA upstream 31763 11525726 ~ 11526083 (+) True G113334
TU129624 lncRNA downstream 5628 11564007 ~ 11564528 (+) True G113350
TU129607 lncRNA downstream 6931 11565310 ~ 11565683 (+) False G113340
TU129608 lncRNA downstream 6931 11565310 ~ 11565683 (+) False G113340
TU129609 lncRNA downstream 6931 11565310 ~ 11565683 (+) False G113340
TU129610 lncRNA downstream 6931 11565310 ~ 11565683 (+) True G113340
XM_036938016.1 mRNA upstream 99415 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 99415 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 99415 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 105930 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 144133 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 741160 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 913861 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1003958 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1003964 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1003978 12562357 ~ 12616197 (+) False LOC110513835
TU129561 other upstream 75105 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 142668 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 284846 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 284949 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 314777 11240732 ~ 11243069 (+) False fbxo32
TU129672 other downstream 150224 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1162029 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1162351 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1203853 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1390981 12949360 ~ 12964930 (+) True G114323

Expression Profile