RNA id: TU129608


Basic Information

Item Value
RNA id TU129608
length 306
lncRNA type intronic
GC content 0.48
exon number 2
gene id G113340
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11565310 ~ 11565683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGTACTATAAACACAGGAGAAACAAGGAGAATAGAAGTAGAGTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTGATGTaggagtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129624 lncRNA upstream 782 11564007 ~ 11564528 (+) True G113350
TU129622 lncRNA upstream 6931 11557525 ~ 11558379 (+) False G113348
TU129621 lncRNA upstream 6931 11557846 ~ 11558379 (+) True G113348
TU129615 lncRNA upstream 13040 11551546 ~ 11552270 (+) True G113344
TU129613 lncRNA upstream 16706 11547535 ~ 11548604 (+) True G113343
TU129627 lncRNA downstream 7127 11572810 ~ 11575174 (+) False G113353
TU129628 lncRNA downstream 7647 11573330 ~ 11575573 (+) True G113353
TU129647 lncRNA downstream 63264 11628947 ~ 11629987 (+) True G113372
TU129648 lncRNA downstream 64439 11630122 ~ 11630512 (+) True G113373
TU129659 lncRNA downstream 97798 11663481 ~ 11663949 (+) True G113384
XM_036938016.1 mRNA upstream 106879 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 106879 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 106879 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 113394 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 151597 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 733856 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 906557 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 996654 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 996660 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 996674 12562357 ~ 12616197 (+) False LOC110513835
TU129561 other upstream 82569 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 150132 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 292310 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 292413 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 322241 11240732 ~ 11243069 (+) False fbxo32
TU129672 other downstream 142920 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1154725 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1155047 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1196549 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1383677 12949360 ~ 12964930 (+) True G114323

Expression Profile