RNA id: TU129628


Basic Information

Item Value
RNA id TU129628
length 362
lncRNA type intronic
GC content 0.51
exon number 3
gene id G113353
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11572810 ~ 11575573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactataccatgtatctgagtctctctctgactgactacaatatacacactacactataccatgtatctgagtctctctctctgactgactacaatatacacacaacactataccatgtatctgagtctctctctgactgactacaatatacacacaacacTATACCATGTATCCGAGTCTCTctctacaatatacacacaacactataccatgtatctgagtctctctctacaatatacacacaacactataccatgtatctgagtctctctctacaatatacacacaacactataccatgtatctgagtctctctctacaatatacacacaacactataccatgtatctgagtctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129607 lncRNA upstream 7647 11565310 ~ 11565683 (+) False G113340
TU129608 lncRNA upstream 7647 11565310 ~ 11565683 (+) False G113340
TU129609 lncRNA upstream 7647 11565310 ~ 11565683 (+) False G113340
TU129610 lncRNA upstream 7647 11565310 ~ 11565683 (+) True G113340
TU129624 lncRNA upstream 8802 11564007 ~ 11564528 (+) True G113350
TU129647 lncRNA downstream 53374 11628947 ~ 11629987 (+) True G113372
TU129648 lncRNA downstream 54549 11630122 ~ 11630512 (+) True G113373
TU129659 lncRNA downstream 87908 11663481 ~ 11663949 (+) True G113384
TU129662 lncRNA downstream 91025 11666598 ~ 11667653 (+) True G113387
TU129668 lncRNA downstream 104150 11679723 ~ 11681488 (+) True G113392
XM_036938016.1 mRNA upstream 114899 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 114899 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 114899 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 121414 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 159617 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 723966 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 896667 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 986764 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 986770 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 986784 12562357 ~ 12616197 (+) False LOC110513835
TU129561 other upstream 90589 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 158152 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 300330 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 300433 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 330261 11240732 ~ 11243069 (+) False fbxo32
TU129672 other downstream 133030 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1144835 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1145157 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1186659 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1373787 12949360 ~ 12964930 (+) True G114323

Expression Profile