RNA id: TU129647


Basic Information

Item Value
RNA id TU129647
length 427
lncRNA type intronic
GC content 0.45
exon number 2
gene id G113372
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11628947 ~ 11629987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTAACAGTAGAGGTAGCAGTCTTCACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTTCAGCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAGGTAGCAGTCTTCACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTTCACCCTAACAGTAGAAGTAGCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTGTACCCTAACAGTAGAAGTACCAGTCTTCACCCTAACAGTAGAAGTACCAGTCGATCCCTAACAGTAGAAGTACCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129628 lncRNA upstream 53374 11573330 ~ 11575573 (+) True G113353
TU129627 lncRNA upstream 53773 11572810 ~ 11575174 (+) False G113353
TU129607 lncRNA upstream 63264 11565310 ~ 11565683 (+) False G113340
TU129608 lncRNA upstream 63264 11565310 ~ 11565683 (+) False G113340
TU129609 lncRNA upstream 63264 11565310 ~ 11565683 (+) False G113340
TU129648 lncRNA downstream 135 11630122 ~ 11630512 (+) True G113373
TU129659 lncRNA downstream 33494 11663481 ~ 11663949 (+) True G113384
TU129662 lncRNA downstream 36611 11666598 ~ 11667653 (+) True G113387
TU129668 lncRNA downstream 49736 11679723 ~ 11681488 (+) True G113392
TU129681 lncRNA downstream 94596 11724583 ~ 11782799 (+) True G113405
XM_036938016.1 mRNA upstream 170516 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 170516 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 170516 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 177031 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 215234 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 669552 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 842253 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 932350 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 932356 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 932370 12562357 ~ 12616197 (+) False LOC110513835
TU129561 other upstream 146206 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 213769 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 355947 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 356050 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 385878 11240732 ~ 11243069 (+) False fbxo32
TU129672 other downstream 78616 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1090421 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1090743 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1132245 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1319373 12949360 ~ 12964930 (+) True G114323

Expression Profile