RNA id: TU129709


Basic Information

Item Value
RNA id TU129709
length 605
lncRNA type intronic
GC content 0.47
exon number 3
gene id G113432
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11779245 ~ 11780182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attccctacatagagcactactttagaccaggaccctattccctacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagagccctattccctacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagagccctattccctacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctacctagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctatatagtgcactactatagaccagggccctattccccacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctacatagtgcactactttagaccagaaccctattccctacctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129689 lncRNA upstream 39573 11739098 ~ 11739672 (+) True G113413
TU129668 lncRNA upstream 97757 11679723 ~ 11681488 (+) True G113392
TU129662 lncRNA upstream 111592 11666598 ~ 11667653 (+) True G113387
TU129659 lncRNA upstream 115296 11663481 ~ 11663949 (+) True G113384
TU129648 lncRNA upstream 148733 11630122 ~ 11630512 (+) True G113373
TU129724 lncRNA downstream 54183 11834365 ~ 11836686 (+) True G113445
TU129736 lncRNA downstream 70402 11850584 ~ 11851024 (+) True G113455
TU129740 lncRNA downstream 93830 11874012 ~ 11874418 (+) True G113459
TU129741 lncRNA downstream 95168 11875350 ~ 11875751 (+) True G113460
TU129752 lncRNA downstream 109023 11889205 ~ 11889672 (+) True G113469
XM_036938016.1 mRNA upstream 320814 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 320814 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 320814 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 327329 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 365532 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 519357 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 692058 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 782155 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 782161 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 782175 12562357 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 69468 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 296504 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 364067 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 506245 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 940226 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 940548 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 982050 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 1169178 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1841795 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile