RNA id: TCONS_00028126


Basic Information

Item Value
RNA id TCONS_00028126
length 923
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_014116
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29798064 ~ 29800812 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTGTAGGACTGGAACTGGTAGTAGTAGGTCGAGTCGACGCTCACGGGTGGAAGACAAGAGTGGATCATCTCAAGTTTTCCTTCTGAaggaaaaaaacagcaactttcCTCGCGCATTTGGATGCACGTTACGCCCATTGTATAATGGGATCCCAGGCATCAAAGGGAGGAGTGGCTGTGGAGGGGAAAGCCGCCGCTGCTGACCCGGCTGCCGTCAAGACTAACGGACAGgagAACGGTCATGTTAAGACCAATGGTGATGTCTCTGCCAAGGCAGAGGGAGATGCTGCCACCACCAACGGTTCTGCAGAAGCAGCTAAGGAATCTGAGGCTGGAGCCGGCGACGCCATCGAACCAGCGCCTGCCGCTGAGGGAGAGGCTGCCAAACCTGAGGGCGAGGCCACCAAGGAGACccccaagaagaagaagaagaagttctCCCTGAAGAACTCCTTCAAATTCAAGGGTATCTCACTGAAGAAGAGCAAGAAGAATGCTGAGGTGAAGGAAGAGGCCGCTGCTGCTGCTCCAGCTACCGAAGAGAAGCCAGAGGAGAATGGAGCAGCcactgaggagaagaaagagGAGGAGGCCAAGGCCGAGGAGACACCCGCTGCCCCTGTTGAAACCCCCAAGGCCGAGGAGCCTGCAGCCAAGGCTGAGGAGCCTGCTGCTGCAAAGGAAGAGGCTGCTGCACCTGCTGTAGAGGCCACGAAACAAACAGAGGAGACCAACTCAACACCTGCACCATCTGAACAGAAGGAGTGATTGTACTTCACAAAGGACTTTGTGAACTGTTTttccaagaaaaaaatatatatttatatatatgtgtatatgtatacatatgtatatatacatggatatatgtatatgtatatatacacatgtatgtgAAAAAGACTCCTTGTGCCACTTTC

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0051216 cartilage development biological_process
GO:0007015 actin filament organization biological_process
GO:0007417 central nervous system development biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2315 Predicted to enable actin filament binding activity. Acts upstream of or within cartilage development; central nervous system development; and neural retina development. Predicted to be located in cytoskeleton and membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; and skeletal muscle. Orthologous to human MARCKSL1 (MARCKS like 1).

Ensembl:

ensembl_id ENSDART00000167803

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029952 lncRNA upstream 46321 29746138 ~ 29751743 (+) False XLOC_014115
TCONS_00029953 lncRNA upstream 46321 29750095 ~ 29751743 (+) True XLOC_014115
TCONS_00029949 lncRNA upstream 191061 29459117 ~ 29607003 (+) False XLOC_014114
TCONS_00029951 lncRNA upstream 191061 29459174 ~ 29607003 (+) True XLOC_014114
TCONS_00029948 lncRNA upstream 196610 29459117 ~ 29601454 (+) False XLOC_014114
TCONS_00028130 lncRNA downstream 8508 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029954 lncRNA downstream 8508 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA downstream 14577 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028144 lncRNA downstream 787661 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA downstream 787661 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00028125 mRNA upstream 434285 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028124 mRNA upstream 464197 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028116 mRNA upstream 1463909 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028113 mRNA upstream 1464224 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028115 mRNA upstream 1477925 28291376 ~ 28320139 (+) False XLOC_014108
TCONS_00028128 mRNA downstream 8266 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028129 mRNA downstream 8494 29808699 ~ 29818648 (+) False XLOC_014117
TCONS_00028131 mRNA downstream 8517 29808722 ~ 29815366 (+) False XLOC_014117
TCONS_00028133 mRNA downstream 54018 29854223 ~ 29860218 (+) False XLOC_014118
TCONS_00028135 mRNA downstream 54077 29854282 ~ 29857036 (+) False XLOC_014118
TCONS_00028123 other upstream 477181 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 594807 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 1463900 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 1466967 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 1482111 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028134 other downstream 54044 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 58831 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 718250 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 830738 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 1079583 30879788 ~ 30882456 (+) True XLOC_014131

Expression Profile

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