RNA id: TU129917


Basic Information

Item Value
RNA id TU129917
length 223
lncRNA type intronic
GC content 0.52
exon number 3
gene id G113589
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12189257 ~ 12193804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tTAACAGGTGTGTCCCCTATATAGTCCTGGTTAACAGGTGTGTCCCCTATATAGTCCTGGTTAACATGTGTGTCCCCTATATAGTCCAGGTTAACAggtgtgttccctatatagtcctggttaacaggtgtgtcccctatatagtcctggttaacaggtgtgttccctatatagtccaggttaacaggtgtgttccctatatagtccaggttaacaggtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129919 lncRNA upstream 598 12189257 ~ 12191035 (+) False G113589
TU129916 lncRNA upstream 1174 12190113 ~ 12190459 (+) False G113589
TU129902 lncRNA upstream 45837 12145155 ~ 12145796 (+) True G113577
TU129899 lncRNA upstream 68650 12121934 ~ 12122983 (+) True G113574
TU129895 lncRNA upstream 79436 12111708 ~ 12112197 (+) True G113570
TU129929 lncRNA downstream 10567 12203682 ~ 12204188 (+) True G113593
TU129963 lncRNA downstream 81179 12274294 ~ 12274762 (+) True G113619
TU129980 lncRNA downstream 106402 12299517 ~ 12300453 (+) False LOC110511179
TU129981 lncRNA downstream 106402 12299517 ~ 12300453 (+) True LOC110511179
TU129986 lncRNA downstream 108094 12301209 ~ 12307847 (+) True G113634
XM_036938016.1 mRNA upstream 733202 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 733202 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 733202 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 739717 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 777920 11402943 ~ 11413713 (+) True fbxo43
XR_005035111.1 mRNA downstream 106424 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 279125 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 369222 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 369228 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 369242 12562357 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 481856 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 708892 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 776455 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 918633 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 527293 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 527615 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 569117 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 756245 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1428862 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile