RNA id: TU130002


Basic Information

Item Value
RNA id TU130002
length 483
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G113644
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12312808 ~ 12314280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgagggttgcaactgaggacagacgatttgtaTGCGCTTCAGCAcacggtggtcccgttctgtgagcttgtgtggtctaccacttcgtggctgagccgttgttgctcctagacgtttccacttcagaataacagcacttacagttgaccggggcggctctagcagggcagaaatttgacaaactgacttgttggaaaggtggcatcttatgacggtgccacattgaaagtcactgagctcttcagtaaggccattctactggcaatgtttgtctatggagattgcatggcagtgtgctcgatttatacacctgtcagcaacaagtgtggctgaaatagcagaatccactaattttagaataatgtgaagacatcaaaaatatgaaattacacatatggaatcatgtagggaccaaaacagtgtagtagtagtggtggtagtagtagtggtggtggtagtagtggtaggtgagtagtagtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129986 lncRNA upstream 4961 12301209 ~ 12307847 (+) True G113634
TU129980 lncRNA upstream 12355 12299517 ~ 12300453 (+) False LOC110511179
TU129981 lncRNA upstream 12355 12299517 ~ 12300453 (+) True LOC110511179
TU129963 lncRNA upstream 38046 12274294 ~ 12274762 (+) True G113619
TU129929 lncRNA upstream 108620 12203682 ~ 12204188 (+) True G113593
TU130775 lncRNA downstream 23597 12337877 ~ 12338131 (+) True G114105
TU130798 lncRNA downstream 43585 12357865 ~ 12358192 (+) True G114125
TU130808 lncRNA downstream 68530 12382810 ~ 12385066 (+) True G114135
TU130819 lncRNA downstream 92728 12407008 ~ 12408920 (+) True G114140
TU130828 lncRNA downstream 97764 12412044 ~ 12414925 (+) True G114144
XR_005035111.1 mRNA upstream 12851 12299539 ~ 12299957 (+) False LOC110511179
XM_036938016.1 mRNA upstream 854377 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 854377 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 854377 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 860892 11416206 ~ 11451916 (+) False LOC110510416
XR_005039499.1 mRNA downstream 157960 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 248057 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 248063 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 248077 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA downstream 248642 12562922 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 603031 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 830067 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 897630 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1039808 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 406128 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 406450 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 447952 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 635080 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1307697 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile