RNA id: TU130798


Basic Information

Item Value
RNA id TU130798
length 328
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G114125
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12357865 ~ 12358192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGGCAATCCGGGAACAACTGCTTGAAAAGATGGCGGCCAACGGAGAAGGCCGTTCCAACCGGTCGTTTCCTACGTTCTTTTATGTACACAAAGATCCTACTACTGTCACATACGACCACCAAGCACTTCTGGACTGTCAGATCGACAGTTACTAACCTGGATTTAGACTTCATAATCCGACTTCAACTCCGACTCAGCTGTTTCCCTTGTTCACACCGGACGCAATCCCTTTATTTCATGTGCTGCAGGGGCAGATGAGCTGGCATCCTGGTGAGACAATGCTGCAGGGGCAGATGAGCTGGCATCCTGGTGAGACAATGCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130775 lncRNA upstream 19734 12337877 ~ 12338131 (+) True G114105
TU130002 lncRNA upstream 43585 12312808 ~ 12314280 (+) True G113644
TU129986 lncRNA upstream 50018 12301209 ~ 12307847 (+) True G113634
TU129980 lncRNA upstream 57412 12299517 ~ 12300453 (+) False LOC110511179
TU129981 lncRNA upstream 57412 12299517 ~ 12300453 (+) True LOC110511179
TU130808 lncRNA downstream 24618 12382810 ~ 12385066 (+) True G114135
TU130819 lncRNA downstream 48816 12407008 ~ 12408920 (+) True G114140
TU130828 lncRNA downstream 53852 12412044 ~ 12414925 (+) True G114144
TU130820 lncRNA downstream 72743 12430935 ~ 12555437 (+) True LOC118944185
TU130866 lncRNA downstream 116180 12474372 ~ 12475714 (+) True G114161
XR_005035111.1 mRNA upstream 57908 12299539 ~ 12299957 (+) False LOC110511179
XM_036938016.1 mRNA upstream 899434 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 899434 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 899434 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 905949 11416206 ~ 11451916 (+) False LOC110510416
XR_005039499.1 mRNA downstream 114048 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 204145 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 204151 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 204165 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA downstream 204730 12562922 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 648088 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 875124 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 942687 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1084865 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 362216 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 362538 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 404040 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 591168 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1263785 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile