RNA id: TU131167


Basic Information

Item Value
RNA id TU131167
length 608
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G114340
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12382090 ~ 12384153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagaccacagaccacagacAGACCACCGACAGACTCATCCCAGAGactcaacagacaggttataatggtgtcatctcagcagacaggttataatggtgtcatctcagcagacaggttataatggtgtcatctcagagactcagcagacaggttataatggtgtcatctcagcagacaggttataatggtgtcatctcagagactcagcagacaggttataaCGGTGTCACctcagcagacaggttataatgatgtcatctcaacagacaggttataatggtgtcatctcaacagacatgttataacggtgtcatctcaacagacaggttataatggtgtcatctcaacagacaggttataatggtgtcaccTCAGCatacaggttataatggtgtcatctcaacagacaggttataatggtgtcatctcaacagacaggttataatggtgtcatctcaacagacaggttataatggtgtcatctcagcagacaggttataatggtgtcatctcagcagacaggttataatggtgttatctcaacagacaggttataatggtgttatctcaacagacaggttataatggtgtcatctcagcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130778 lncRNA downstream 39919 12341967 ~ 12342171 (-) True G114108
TU130774 lncRNA downstream 59365 12322519 ~ 12322725 (-) True G114104
TU130723 lncRNA downstream 107661 12271706 ~ 12274429 (-) True G114075
TU130726 lncRNA downstream 112269 12265543 ~ 12269821 (-) True G114077
TU130719 lncRNA downstream 114469 12267259 ~ 12267621 (-) True G114074
TU131179 lncRNA upstream 22855 12407008 ~ 12408829 (-) True G114345
TU131162 lncRNA upstream 40042 12424195 ~ 12428711 (-) True G114336
TU131198 lncRNA upstream 71609 12455762 ~ 12456037 (-) True G114359
TU131200 lncRNA upstream 78593 12462746 ~ 12464158 (-) True G114361
TU131201 lncRNA upstream 80412 12464565 ~ 12466400 (-) True G114362
XM_036938107.1 mRNA downstream 77140 12299928 ~ 12304950 (-) True osr2
XM_036938110.1 mRNA downstream 77141 12299928 ~ 12304949 (-) False osr2
XR_005035081.1 mRNA downstream 292661 12085564 ~ 12089429 (-) False LOC118937706
XR_005035090.1 mRNA downstream 292661 12085564 ~ 12089429 (-) False LOC118937706
XR_005035103.1 mRNA downstream 293094 12085564 ~ 12088996 (-) False LOC118937706
XM_036961628.1 mRNA upstream 51316 12435469 ~ 12445157 (-) True LOC118944056
XR_005035115.1 mRNA upstream 165146 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA upstream 165147 12549300 ~ 12553519 (-) True LOC118937718
XR_005039515.1 mRNA upstream 233353 12617506 ~ 12617694 (-) True LOC118944197
XM_036938156.1 mRNA upstream 255549 12639702 ~ 12673826 (-) False pop1
TU130213 other downstream 723422 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 1029349 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 1029349 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 1056478 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 1069432 11310843 ~ 11312658 (-) True G113712
TU131242 other upstream 199874 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 226516 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 323674 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 351161 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 707939 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile