RNA id: TU130808


Basic Information

Item Value
RNA id TU130808
length 2229
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G114135
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12382810 ~ 12385066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tataacctgtctgctgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagataacaccattataacctgtctgctgagatgacaccattataacctgtctgctgagatgacaccattataacctgtctgctgaggtgacaccattataacctgtctgttgagataacaccattataacctgtctgttgagataacaccattataacctgtctgctgagatgacaccattataacctgtctgctgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagataacaccattataacctgtctgttgagataacaccattataacctgtctgttgagatgacaccattataacctgtctgctgaggtgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccattataacctgtctgctgaggtgacaccattataacctgtctgttgagatgacaccattataacctgtctgttgagatgacaccgttataacatgtctgttgagatgacaccattataacctgtctgttgagatgacatcattataacctgtctgttgaggtgacaccattataacctgtctgctgagGTGACACCGttataacctgtctgctgagGTGACACCgttataacctgtctgttgagatgacaccgttataacctgtctgctgagGTGACACTgttataacctgtctgttgagatgacaccattataacctgtctgctgagGTGACACCgttataacctgtctgttgagatgacaccattataacctgtctgctgaggtgacaccattataacctgtctgctgaggtgacaccattataacctgtctgctgagGTGACACCgttataacctgtctgttgagatgacatcattataacctgtctgctgagGTGACACCGttataacctgtctgctgagtctctgagatgacaccattataacctgtctgctgagatgacaccattataacctgtctgctgagtctctgagatgacaccattataacctgtctgctgagatgacaccattataacctgtctgctgagatgacaccattataacctgtctgttgagtCTCTGGGATGAGTCTGTCGGTGGTCTgtctgtggtctgtggtctgtctgtgggtctgtggtctgtctgtggtctgtctgtggtctgtggtctgtccgtggtctgtctgtggtctgtggtctgtctgtggtctgtctgtggtctatggtctgtctgttgtctgtctgtagtctgtggtctgtctgtggtctgtctgtggtctgtggtctgtctgtggtctgtctgtggtctgtctgtggtctgtctgtggtctgtctgagggtctgtggtctgtggtctgtctgtGGGTCTGTGGTCTGTCAGTATGAAGAGATTTTTGTCGGCCACAGCGAGGGCCAGACTGCCACAGTACTAAACCTGAATTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAATTAGACAGTTGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATGCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATAGGATCTGAACTAGACAGTGGTGTAGATCCCAGATAGGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGACAGTGGTGTAGATCCCAGATATGATCTGAACCAGACAGTGGTGTAGATCCCAGATATGATCTGAACTAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130798 lncRNA upstream 24618 12357865 ~ 12358192 (+) True G114125
TU130775 lncRNA upstream 44679 12337877 ~ 12338131 (+) True G114105
TU130002 lncRNA upstream 68530 12312808 ~ 12314280 (+) True G113644
TU129986 lncRNA upstream 74963 12301209 ~ 12307847 (+) True G113634
TU129980 lncRNA upstream 82357 12299517 ~ 12300453 (+) False LOC110511179
TU130819 lncRNA downstream 21942 12407008 ~ 12408920 (+) True G114140
TU130828 lncRNA downstream 26978 12412044 ~ 12414925 (+) True G114144
TU130820 lncRNA downstream 45869 12430935 ~ 12555437 (+) True LOC118944185
TU130866 lncRNA downstream 89306 12474372 ~ 12475714 (+) True G114161
TU130876 lncRNA downstream 145786 12530852 ~ 12535346 (+) True G114167
XR_005035111.1 mRNA upstream 82853 12299539 ~ 12299957 (+) False LOC110511179
XM_036938016.1 mRNA upstream 924379 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 924379 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 924379 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 930894 11416206 ~ 11451916 (+) False LOC110510416
XR_005039499.1 mRNA downstream 87174 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 177271 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 177277 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 177291 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA downstream 177856 12562922 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 673033 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 900069 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 967632 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1109810 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 335342 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 335664 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 377166 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 564294 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1236911 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile