Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029954 |
| length | 2041 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 11 |
| gene id | XLOC_014117 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 29808471 ~ 29821601 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002244 | hematopoietic progenitor cell differentiation | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0033687 | osteoblast proliferation | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0048565 | digestive tract development | biological_process |
| GO:0050673 | epithelial cell proliferation | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0016575 | histone deacetylation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0050769 | positive regulation of neurogenesis | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0070932 | histone H3 deacetylation | biological_process |
| GO:0070933 | histone H4 deacetylation | biological_process |
| GO:0048935 | peripheral nervous system neuron development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0021754 | facial nucleus development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0048706 | embryonic skeletal system development | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0000118 | histone deacetylase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0032041 | NAD-dependent histone deacetylase activity (H3-K14 specific) | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004407 | histone deacetylase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029952 | lncRNA | upstream | 56970 | 29746138 ~ 29751743 (+) | False | XLOC_014115 |
| TCONS_00029953 | lncRNA | upstream | 56970 | 29750095 ~ 29751743 (+) | True | XLOC_014115 |
| TCONS_00029949 | lncRNA | upstream | 201710 | 29459117 ~ 29607003 (+) | False | XLOC_014114 |
| TCONS_00028144 | lncRNA | downstream | 772134 | 30587866 ~ 30589951 (+) | False | XLOC_014124 |
| TCONS_00028143 | lncRNA | downstream | 772134 | 30587866 ~ 30589951 (+) | True | XLOC_014124 |
| TCONS_00029723 | lncRNA | downstream | 909264 | 30724996 ~ 30725703 (+) | True | XLOC_014127 |
| TCONS_00029955 | lncRNA | downstream | 984320 | 30800052 ~ 30801988 (+) | True | XLOC_014128 |
| TCONS_00029956 | lncRNA | downstream | 1016558 | 30832290 ~ 30836205 (+) | True | XLOC_014129 |
| TCONS_00028127 | mRNA | upstream | 7901 | 29798106 ~ 29800812 (+) | True | XLOC_014116 |
| TCONS_00028126 | mRNA | upstream | 8508 | 29798064 ~ 29800205 (+) | False | XLOC_014116 |
| TCONS_00028125 | mRNA | upstream | 444934 | 29337789 ~ 29363779 (+) | True | XLOC_014113 |
| TCONS_00028124 | mRNA | upstream | 474846 | 29303847 ~ 29333867 (+) | True | XLOC_014112 |
| TCONS_00028116 | mRNA | upstream | 1474558 | 28291440 ~ 28334155 (+) | False | XLOC_014108 |
| TCONS_00028133 | mRNA | downstream | 38491 | 29854223 ~ 29860218 (+) | False | XLOC_014118 |
| TCONS_00028135 | mRNA | downstream | 38550 | 29854282 ~ 29857036 (+) | False | XLOC_014118 |
| TCONS_00028137 | mRNA | downstream | 572267 | 30387999 ~ 30399178 (+) | False | XLOC_014119 |
| TCONS_00028138 | mRNA | downstream | 572454 | 30388186 ~ 30399876 (+) | True | XLOC_014119 |
| TCONS_00028139 | mRNA | downstream | 607385 | 30423117 ~ 30428901 (+) | True | XLOC_014120 |
| TCONS_00028123 | other | upstream | 487830 | 29303847 ~ 29320883 (+) | False | XLOC_014112 |
| TCONS_00028122 | other | upstream | 605456 | 29203142 ~ 29203257 (+) | True | XLOC_014111 |
| TCONS_00028118 | other | upstream | 1474549 | 28331227 ~ 28334164 (+) | True | XLOC_014108 |
| TCONS_00028117 | other | upstream | 1477616 | 28321679 ~ 28331097 (+) | False | XLOC_014108 |
| TCONS_00028114 | other | upstream | 1492760 | 28291376 ~ 28315953 (+) | False | XLOC_014108 |
| TCONS_00028134 | other | downstream | 38517 | 29854249 ~ 29860206 (+) | False | XLOC_014118 |
| TCONS_00028136 | other | downstream | 43304 | 29859036 ~ 29860334 (+) | True | XLOC_014118 |
| TCONS_00028142 | other | downstream | 702723 | 30518455 ~ 30518573 (+) | True | XLOC_014123 |
| TCONS_00028145 | other | downstream | 815211 | 30630943 ~ 30631060 (+) | True | XLOC_014125 |
| TCONS_00028149 | other | downstream | 1064056 | 30879788 ~ 30882456 (+) | True | XLOC_014131 |
