RNA id: TU131257


Basic Information

Item Value
RNA id TU131257
length 532
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G114401
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12618521 ~ 12619052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTACTTCCTGTGGGGATGCAAgtgggagaggctgaggagggaggTGGTCAAGAGGCCCAGGTCCAAGGGGGGGAAAGGCTTGCCTGACCTCTACTTGTTCCTGGGCAGCCGCTACACAGCGTTACATCTGACTCTTGCCACCTCCCCGGTCAACAACAAGACCCAGGCCCTCACACGGTTCTGGCTGGGATCTTACCTCAGGACTCTGAGGCTGATCCCAGTCGACCTGCGAGCACCAGTCTCTTTCCTGCTACCCCCGCACTACGTCCAGCTCCAGAAGTTTTTAAGACATTTTAAACTGGAAAAAGAAACAGTCACGGTTTTAACAAAAcaccgctctcttctctctcttgtgcaGGATCGGGAACCAGTGTGTCCAGTGCGCGGGCTCGCTATAGGTGAGCCCACAACGGTTTGGCGCAACGTGGCCCATCCTGCTCTCCTGAATCGGCATCGGGACCTGTCCTGGATGGTCGCCCACGAGATCCTCCCGGTCAGGGCCGTTATGCACTCACGGGGCATGGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131255 lncRNA downstream 9577 12604971 ~ 12608944 (-) True G114399
TU131244 lncRNA downstream 26681 12588120 ~ 12591840 (-) True G114391
TU131243 lncRNA downstream 29078 12588120 ~ 12589443 (-) False G114391
TU131241 lncRNA downstream 40157 12577859 ~ 12578364 (-) True G114389
TU131211 lncRNA downstream 142752 12474320 ~ 12475769 (-) True G114364
TU131256 lncRNA upstream 4237 12623289 ~ 12624052 (-) True G114400
TU131260 lncRNA upstream 6647 12625699 ~ 12626684 (-) True G114404
TU131261 lncRNA upstream 15697 12634749 ~ 12634983 (-) True G114405
TU131262 lncRNA upstream 17711 12636763 ~ 12637000 (-) True G114406
TU131263 lncRNA upstream 21612 12640664 ~ 12641135 (-) True pop1
XR_005039515.1 mRNA downstream 827 12617506 ~ 12617694 (-) True LOC118944197
XR_005035115.1 mRNA downstream 65002 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA downstream 65002 12549300 ~ 12553519 (-) True LOC118937718
XM_036961628.1 mRNA downstream 173364 12435469 ~ 12445157 (-) True LOC118944056
XM_036938107.1 mRNA downstream 313571 12299928 ~ 12304950 (-) True osr2
XM_036938156.1 mRNA upstream 20650 12639702 ~ 12673826 (-) False pop1
XM_036938159.1 mRNA upstream 20650 12639702 ~ 12673874 (-) False pop1
XM_036938190.1 mRNA upstream 64006 12683058 ~ 12683775 (-) True LOC118937724
XM_036938172.1 mRNA upstream 64041 12683093 ~ 12715610 (-) False LOC118937723
XM_036938186.1 mRNA upstream 64041 12683093 ~ 12715610 (-) False LOC118937723
TU131258 other downstream 4841 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 33381 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 959853 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 1265780 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 1265780 11349342 ~ 11352741 (-) True G113733
TU131298 other upstream 88775 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 116262 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 473040 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 676781 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 711696 13330748 ~ 13332309 (-) False G114812

Expression Profile