RNA id: TU130918


Basic Information

Item Value
RNA id TU130918
length 838
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G114193
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12623308 ~ 12624145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacaaatttaGGTAAGGGGAATTAAGGGGATAACAAAAGGAACACTGACCAACACAACACCTGCCAAACTTGAGGGCCGAGAGGGCTAGCAGGCCTCACCAGCAGGCCAGGCCAAGCTAACCAGCTAGCAAGCCTCACCAGTAGGCCAGGCCAAGCCAACCAGCTAGCAAGCCTCACCAGTAGGCCAGGCCAAGCCAACCAGCTAGCAAGCCTCACCAGTAGGCCAGGCCAAGCCAACCAGCTAGCAAGCCGGCAGGCCAAAGGTCCCCCAGTTGACAACACAAGACAAGAAACAGAGACAAAAGGCAATTTAGGGGGTGAACTAGCAAGTACAAGGTGGATGGGAGAATACGGtcagacaaacacacaacaatgcaATGCCTGCCACGCCTAAAGGGCCAGGAGGCTAGCGTTCCAACAAGCCAGAAAGCCCCTCCGGCTAGCAGGcaacacaaaactcaaaacagtaGGAAATAATTGAAGGGGGGAGGGTAGGATACAAGGGGGAGGATAGGTACTAAACAGGACAAACAAGGGGAAACTGAAATTTAAATTAAATAAGAAAGAAAAGGACCAGAGGGCCTTCAAACTCACCCTACAGGTGCTGGTGCACCTGTAGTCCACCACCAGACCCACCACCTAACCCAGGACAAAAATAATAGTGAAACAATACAACAATAATGATTTTAAACAAAAGTAATTAGCACAATCTCCCGGGCGCCCTCCGGCCTGCGATCGCTTCTCTGATCAAGAGCAGCACTGTCAAGGACAATGCAcgtgatcttagccaaaaggccgagaagcgataccCACAATGGTTTCGGGATGAAGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130917 lncRNA upstream 4072 12618605 ~ 12619236 (+) True G114192
TU130827 lncRNA upstream 7965 12615208 ~ 12615343 (+) True LOC110513835
TU130916 lncRNA upstream 19773 12602886 ~ 12603535 (+) True G114191
TU130820 lncRNA upstream 67871 12430935 ~ 12555437 (+) True LOC118944185
TU130919 lncRNA downstream 37 12624182 ~ 12624405 (+) True G114194
TU130922 lncRNA downstream 1573 12625718 ~ 12626847 (+) True G114196
TU130923 lncRNA downstream 4569 12628714 ~ 12628969 (+) True G114197
TU130924 lncRNA downstream 10600 12634745 ~ 12635162 (+) True G114198
TU130925 lncRNA downstream 16546 12640691 ~ 12641149 (+) True G114199
XM_036938134.1 mRNA upstream 7111 12562337 ~ 12616197 (+) False LOC110513835
XM_036938166.1 mRNA downstream 49940 12674085 ~ 12680150 (+) True LOC110510520
XM_036938201.1 mRNA downstream 92429 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 92429 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 92429 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 92429 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 913531 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1140567 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1208130 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1350308 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 96263 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 96585 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 138087 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 325215 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 997832 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile