RNA id: TU130922


Basic Information

Item Value
RNA id TU130922
length 304
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G114196
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12625718 ~ 12626847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATCAATGagctgttgtcacccacaggactgccgacctCTCATCACCGagctgttgtcacccacaggactgccgacCTCTCATTAATGAGCtgtttcacccacaggactgccgacCTCTCATTAATGAGCtgtttcacccacaggactgccgacctctcattaatgagctgttttcacccacaggactgctgacctctcatcaatgagctgttttcacccacagaactgccgacctcattaccgagatgttgtcacccacaggactgctgacctctcatcaatgagctgttttcacccacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130919 lncRNA upstream 1313 12624182 ~ 12624405 (+) True G114194
TU130918 lncRNA upstream 1573 12623308 ~ 12624145 (+) True G114193
TU130917 lncRNA upstream 6482 12618605 ~ 12619236 (+) True G114192
TU130827 lncRNA upstream 10375 12615208 ~ 12615343 (+) True LOC110513835
TU130916 lncRNA upstream 22183 12602886 ~ 12603535 (+) True G114191
TU130923 lncRNA downstream 1867 12628714 ~ 12628969 (+) True G114197
TU130924 lncRNA downstream 7898 12634745 ~ 12635162 (+) True G114198
TU130925 lncRNA downstream 13844 12640691 ~ 12641149 (+) True G114199
TU130934 lncRNA downstream 29462 12656309 ~ 12656640 (+) True G114208
TU130935 lncRNA downstream 30412 12657259 ~ 12657636 (+) True G114209
XM_036938134.1 mRNA upstream 9521 12562337 ~ 12616197 (+) False LOC110513835
XM_036938166.1 mRNA downstream 47238 12674085 ~ 12680150 (+) True LOC110510520
XM_036938201.1 mRNA downstream 89727 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 89727 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 89727 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 89727 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 915941 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1142977 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1210540 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1352718 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 93561 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 93883 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 135385 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 322513 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 995130 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile