RNA id: TU130934


Basic Information

Item Value
RNA id TU130934
length 225
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G114208
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12656309 ~ 12656640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCAGAACTGAGCCAGCTGGGACCTCCGCTGTGGAGTACacacctgaggagaggagacaggacagacatgaGTTACGCtttggaggagagacaggacagacatgaGGTACGctttggaggggaggagagacaggacagacatgaGGTACGctttggaggggaggagagacaggacagacatgaGGTACGctttggaggggaggagagacaggacatACATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130925 lncRNA upstream 15160 12640691 ~ 12641149 (+) True G114199
TU130924 lncRNA upstream 21147 12634745 ~ 12635162 (+) True G114198
TU130923 lncRNA upstream 27340 12628714 ~ 12628969 (+) True G114197
TU130922 lncRNA upstream 29462 12625718 ~ 12626847 (+) True G114196
TU130919 lncRNA upstream 31904 12624182 ~ 12624405 (+) True G114194
TU130935 lncRNA downstream 619 12657259 ~ 12657636 (+) True G114209
TU130936 lncRNA downstream 1074 12657714 ~ 12658512 (+) True G114210
TU130943 lncRNA downstream 17019 12673659 ~ 12673918 (+) True G114217
TU130946 lncRNA downstream 24793 12681433 ~ 12682686 (+) False G114220
TU130948 lncRNA downstream 24793 12681433 ~ 12682686 (+) False G114220
XM_036938134.1 mRNA upstream 40112 12562337 ~ 12616197 (+) False LOC110513835
XM_036938166.1 mRNA downstream 17445 12674085 ~ 12680150 (+) True LOC110510520
XM_036938201.1 mRNA downstream 59934 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 59934 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 59934 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 59934 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 946532 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1173568 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1241131 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1383309 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 63768 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 64090 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 105592 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 292720 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 965337 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile