RNA id: TU130935


Basic Information

Item Value
RNA id TU130935
length 206
lncRNA type intronic
GC content 0.49
exon number 2
gene id G114209
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12657259 ~ 12657636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accctcctgtaggttttaactccaaccctgttcctggagagagaccctcctgtagGGTTTAACTCCAACCccaatctagcgcacctgattctaatgattagctggttgataagctgaatcaggttagttacaactggggttggagttaaaacctacaggagggtctctctccaggaacagggtcggagttaaaacctacaggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130934 lncRNA upstream 619 12656309 ~ 12656640 (+) True G114208
TU130925 lncRNA upstream 16110 12640691 ~ 12641149 (+) True G114199
TU130924 lncRNA upstream 22097 12634745 ~ 12635162 (+) True G114198
TU130923 lncRNA upstream 28290 12628714 ~ 12628969 (+) True G114197
TU130922 lncRNA upstream 30412 12625718 ~ 12626847 (+) True G114196
TU130936 lncRNA downstream 78 12657714 ~ 12658512 (+) True G114210
TU130943 lncRNA downstream 16023 12673659 ~ 12673918 (+) True G114217
TU130946 lncRNA downstream 23797 12681433 ~ 12682686 (+) False G114220
TU130948 lncRNA downstream 23797 12681433 ~ 12682686 (+) False G114220
TU130949 lncRNA downstream 23797 12681433 ~ 12682686 (+) False G114220
XM_036938134.1 mRNA upstream 41062 12562337 ~ 12616197 (+) False LOC110513835
XM_036938166.1 mRNA downstream 16449 12674085 ~ 12680150 (+) True LOC110510520
XM_036938201.1 mRNA downstream 58938 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 58938 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 58938 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 58938 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 947482 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1174518 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1242081 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1384259 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 62772 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 63094 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 104596 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 291724 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 964341 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile