RNA id: TU130952


Basic Information

Item Value
RNA id TU130952
length 874
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G114220
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12681433 ~ 12682686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAAACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtggtagtaggtggtagtaggtggtagtaggtggtagtaggtgccaggcgccccggtttgaacagggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130943 lncRNA upstream 7515 12673659 ~ 12673918 (+) True G114217
TU130936 lncRNA upstream 22921 12657714 ~ 12658512 (+) True G114210
TU130935 lncRNA upstream 23797 12657259 ~ 12657636 (+) True G114209
TU130934 lncRNA upstream 24793 12656309 ~ 12656640 (+) True G114208
TU130925 lncRNA upstream 40284 12640691 ~ 12641149 (+) True G114199
TU130953 lncRNA downstream 58 12682744 ~ 12684697 (+) False G114221
TU130955 lncRNA downstream 58 12682744 ~ 12685867 (+) False G114221
TU130956 lncRNA downstream 58 12682744 ~ 12685867 (+) True G114221
TU130966 lncRNA downstream 13494 12696180 ~ 12696433 (+) True G114228
TU130976 lncRNA downstream 33247 12715933 ~ 12716189 (+) True G114234
XM_036938166.1 mRNA upstream 1283 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 65236 12562343 ~ 12616197 (+) False LOC110513835
XM_036938201.1 mRNA downstream 33888 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 33888 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 33888 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 33888 12716574 ~ 12776832 (+) False spag1b
XR_005035124.1 mRNA downstream 33888 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 971656 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1198692 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1266255 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1408433 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 37722 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 38044 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 79546 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 266674 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 939291 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile