RNA id: TU130953


Basic Information

Item Value
RNA id TU130953
length 1594
lncRNA type read_through
GC content 0.44
exon number 4
gene id G114221
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12682744 ~ 12685867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgacacaactgtgggaagcattggagtcaacatggggccagcatccctgtggaacgctttcgacaccttgtagagtccatgacccgacacattgaggctgttctgagggcaactcaatattagggaaggtgttcttaatgttttgttcactcagtgtaaaTTCTCTTctcaacatttcactgtacacTCCGGGTCTACTGTTAAGCTCTTAGTATTCCTTATCTACCTGTTAAATAACCATATTGAAgtaatcattcattcattaatgACTTCCCCCaTCAGCAGGGttcagtctagtccagtccagtctagtccacATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTCCCCCATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTCCCCCATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCGGGGTTCAGTCTAGTCCAGAAGAACAGGTTGAGTTCCACATCAGCAGGGTTCAGTCTAGTCCAGAAGAACAGTTTGTTAGGTTGAGTTCCACATCAGCGGGGTCCAGTCTAGTCCAGAAGAACAGTTTGTTAGATTGTTTGGCTTGTCTTCCTCTTTCAGAGCAGCTAGTAAAAGTCAAGTAGTATTTATTATGAAACATTCTCCCACCGAGAAGCTGTTCAACACAACGTTGACTCCATATTGACAACCTTAAAGTGACCGTGTAGTCTGTCTCTGAACCTCAACTTCACAGTTTGTTGCTAAAGTAGTGCATCGTTTGGCTTCAACACAGCTGTCTGTTAGAGAGAGTCAGAGTTCAGTTGAAAGCCCAGGTGGCTCCAGGTTATTGGGAGTCAGAGAGTTCAGTTGAAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTAGGAAGCCCAGGTGTCTCCAGGTTACATGGTAGGAAGCCCAGGTGTCTCCAGGCTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCATGTGTCTCCAGGCTACATGGTAGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCTAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCCAGGTGTCTCCAGGTTACATGGTTGGAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130946 lncRNA upstream 58 12681433 ~ 12682686 (+) False G114220
TU130948 lncRNA upstream 58 12681433 ~ 12682686 (+) False G114220
TU130949 lncRNA upstream 58 12681433 ~ 12682686 (+) False G114220
TU130951 lncRNA upstream 58 12681433 ~ 12682686 (+) False G114220
TU130952 lncRNA upstream 58 12681433 ~ 12682686 (+) True G114220
TU130966 lncRNA downstream 11483 12696180 ~ 12696433 (+) True G114228
TU130976 lncRNA downstream 31236 12715933 ~ 12716189 (+) True G114234
TU131039 lncRNA downstream 42426 12727123 ~ 12727579 (+) True spag1b
TU131045 lncRNA downstream 45973 12730670 ~ 12731081 (+) True G114248
TU131064 lncRNA downstream 66151 12750848 ~ 12751314 (+) True G114259
XM_036938166.1 mRNA upstream 2594 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 66547 12562343 ~ 12616197 (+) False LOC110513835
XM_036938201.1 mRNA downstream 31877 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 31877 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 31877 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 31877 12716574 ~ 12776832 (+) False spag1b
XR_005035124.1 mRNA downstream 31877 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 972967 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1200003 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1267566 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1409744 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 35711 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 36033 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 77535 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 264663 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 937280 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile