RNA id: TU130966


Basic Information

Item Value
RNA id TU130966
length 202
lncRNA type intronic
GC content 0.45
exon number 2
gene id G114228
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12696180 ~ 12696433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACAACAACACCCTGAAACAGACACACTGCTACAGATGGTACTACAACAACACCCtgaaacagacaaacacactgcTAGAGAGATGGTACTACAACAACACcctgaaacagacacactgctagaGAGATGGTACTACAACAACACCCTGAAACAGACACACTGCTAGAGATGGTACTACAACAACACcctgaaacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130955 lncRNA upstream 10313 12682744 ~ 12685867 (+) False G114221
TU130956 lncRNA upstream 10313 12682744 ~ 12685867 (+) True G114221
TU130953 lncRNA upstream 11483 12682744 ~ 12684697 (+) False G114221
TU130948 lncRNA upstream 13494 12681433 ~ 12682686 (+) False G114220
TU130976 lncRNA downstream 19500 12715933 ~ 12716189 (+) True G114234
TU131039 lncRNA downstream 30690 12727123 ~ 12727579 (+) True spag1b
TU131045 lncRNA downstream 34237 12730670 ~ 12731081 (+) True G114248
TU131064 lncRNA downstream 54415 12750848 ~ 12751314 (+) True G114259
TU131073 lncRNA downstream 72912 12769345 ~ 12769763 (+) True G114268
XM_036938166.1 mRNA upstream 16030 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 79983 12562343 ~ 12616197 (+) False LOC110513835
XM_036938201.1 mRNA downstream 20141 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 20141 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 20141 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 20141 12716574 ~ 12776832 (+) False spag1b
XR_005035124.1 mRNA downstream 20141 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 986403 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1213439 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1281002 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1423180 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 23975 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 24297 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 65799 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 252927 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 925544 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile