RNA id: TU131040


Basic Information

Item Value
RNA id TU131040
length 286
RNA type TUCP
GC content 0.43
exon number 1
gene id G114243
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12720408 ~ 12720693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATATGAAAGGTACTGTCCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGACCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGACCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGACCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGTCCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGTCCCACTAGAGATAGAGCCAGACAATATGAAAGGTACTGACCCACTAGAGATAGAGCCAGACAATATGAAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130976 lncRNA upstream 4219 12715933 ~ 12716189 (+) True G114234
TU130966 lncRNA upstream 23975 12696180 ~ 12696433 (+) True G114228
TU130955 lncRNA upstream 34541 12682744 ~ 12685867 (+) False G114221
TU130956 lncRNA upstream 34541 12682744 ~ 12685867 (+) True G114221
TU130953 lncRNA upstream 35711 12682744 ~ 12684697 (+) False G114221
TU131039 lncRNA downstream 6430 12727123 ~ 12727579 (+) True spag1b
TU131045 lncRNA downstream 9977 12730670 ~ 12731081 (+) True G114248
TU131064 lncRNA downstream 30155 12750848 ~ 12751314 (+) True G114259
TU131073 lncRNA downstream 48652 12769345 ~ 12769763 (+) True G114268
TU131075 lncRNA downstream 51490 12772183 ~ 12772913 (+) True G114270
XM_036938166.1 mRNA upstream 40258 12674085 ~ 12680150 (+) True LOC110510520
XM_036938134.1 mRNA upstream 104211 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA upstream 104211 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA upstream 104211 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA upstream 104211 12562922 ~ 12616197 (+) False LOC110513835
XM_036938231.1 mRNA downstream 192938 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 206128 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 326186 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 326186 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 326186 13046879 ~ 13061306 (+) False LOC110507515
TU129672 other upstream 1010631 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1237667 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1305230 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1447408 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 1447511 11261554 ~ 11272897 (+) True elovl4a
TU131041 other downstream 37 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 41539 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 228667 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 901284 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 980917 13701610 ~ 13709374 (+) False LOC110520780

Expression Profile