RNA id: TU131045


Basic Information

Item Value
RNA id TU131045
length 306
lncRNA type intronic
GC content 0.55
exon number 2
gene id G114248
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12730670 ~ 12731081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgggtcagtgttgggctgtgtgtctgtgctgtgggtcagtgttgggctgtgtgtctgtgctctGGGTCAATGtttggctgtgtgtctgtgctctGGGTCAATGtttggctgtgtgtctgtgctgtgggtcagtgtttggctgtgtgtctgtgctgtgggtcagtgtctgactgtgtgtctgtgctgtgggtcagtgtttggctgtgtgtctgtgctgtcagtcagtgtctggctgtgtgtctgtgctgtggtAGCTaactcaaccccccccccactgtaaaTCCCTGACTGGGGATTTGTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131039 lncRNA upstream 3091 12727123 ~ 12727579 (+) True spag1b
TU130976 lncRNA upstream 14481 12715933 ~ 12716189 (+) True G114234
TU130966 lncRNA upstream 34237 12696180 ~ 12696433 (+) True G114228
TU130955 lncRNA upstream 44803 12682744 ~ 12685867 (+) False G114221
TU130956 lncRNA upstream 44803 12682744 ~ 12685867 (+) True G114221
TU131064 lncRNA downstream 19767 12750848 ~ 12751314 (+) True G114259
TU131073 lncRNA downstream 38264 12769345 ~ 12769763 (+) True G114268
TU131075 lncRNA downstream 41102 12772183 ~ 12772913 (+) True G114270
TU131076 lncRNA downstream 49230 12780311 ~ 12780669 (+) True G114271
TU131077 lncRNA downstream 78841 12809922 ~ 12810124 (+) True G114272
XM_036938166.1 mRNA upstream 50520 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 114473 12562343 ~ 12616197 (+) False LOC110513835
XM_036938231.1 mRNA downstream 182550 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 195740 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 315798 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 315798 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 315798 13046879 ~ 13061306 (+) False LOC110507515
TU131041 other upstream 9355 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 9977 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1020893 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1247929 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1315492 11414931 ~ 11415178 (+) True G113285
TU131068 other downstream 31151 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 218279 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 890896 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 970529 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1230180 13961261 ~ 13962812 (+) True LOC110535330

Expression Profile