RNA id: TU131064


Basic Information

Item Value
RNA id TU131064
length 389
lncRNA type intronic
GC content 0.41
exon number 2
gene id G114259
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12750848 ~ 12751314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGATCCAGCCAATCAGTAATTACAGCAGTTAAACTAGGGAAGTTCTGGAGGAGACAACACTATAGAGGAGGCCTTGTTGGTCTGGTTGAACCCATAGAGTGAGGCTTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGTTGGTCTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGTTGGTCTGGTTGAAACCATAGAGGAGGCTTGGCTGGTCTGGTTGGTCTGGTTGAAACCATAGTGGAGGCTTGGCTGCTCTGGTTGGTCTGGTTGAAACCATAGTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131045 lncRNA upstream 19767 12730670 ~ 12731081 (+) True G114248
TU131039 lncRNA upstream 23269 12727123 ~ 12727579 (+) True spag1b
TU130976 lncRNA upstream 34659 12715933 ~ 12716189 (+) True G114234
TU130966 lncRNA upstream 54415 12696180 ~ 12696433 (+) True G114228
TU130955 lncRNA upstream 64981 12682744 ~ 12685867 (+) False G114221
TU131073 lncRNA downstream 18031 12769345 ~ 12769763 (+) True G114268
TU131075 lncRNA downstream 20869 12772183 ~ 12772913 (+) True G114270
TU131076 lncRNA downstream 28997 12780311 ~ 12780669 (+) True G114271
TU131077 lncRNA downstream 58608 12809922 ~ 12810124 (+) True G114272
TU130978 lncRNA downstream 62366 12813680 ~ 12817484 (+) False G114235
XM_036938166.1 mRNA upstream 70698 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 134651 12562343 ~ 12616197 (+) False LOC110513835
XM_036938231.1 mRNA downstream 162317 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 175507 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 295565 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 295565 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 295565 13046879 ~ 13061306 (+) False LOC110507515
TU131041 other upstream 29533 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 30155 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1041071 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1268107 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1335670 11414931 ~ 11415178 (+) True G113285
TU131068 other downstream 10918 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 198046 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 870663 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 950296 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1209947 13961261 ~ 13962812 (+) True LOC110535330

Expression Profile