RNA id: TU131075



Basic Information


Item Value
RNA id TU131075
length 380
lncRNA type intronic
GC content 0.43
exon number 2
gene id G114270
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12772183 ~ 12772913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGATGATGGTGCTTTGTGGTTTGTTTTGAATCCCGGAATGAAATGAATGTATTTTTCATTCTTGTTCAGTGTTTTGGATCTTTTTATTTAGCTAAACTAGACAGTCTGTTGTCAGGTTGTAGTGCTgaccactgtgtgtctctactgttGTCAGgttgtagtgctgaccactgtgtgtctctactgttGTCAGGTTGTAGTACTgaccactgtgtgtctctactgttGTCAGGTTGTAGTACTgaccactgtgtgtctctactgttGTCAGGTTGTAGTACTgaccactgtgtgtctctactgttGTCAGGGTGTAGTACTgaccactgtgtgtctctactgttGTCAGGTTGTAGTACTgaccactgtgtgtctctac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131073 lncRNA upstream 2420 12769345 ~ 12769763 (+) True G114268
TU131064 lncRNA upstream 20869 12750848 ~ 12751314 (+) True G114259
TU131045 lncRNA upstream 41102 12730670 ~ 12731081 (+) True G114248
TU131039 lncRNA upstream 44604 12727123 ~ 12727579 (+) True spag1b
TU130976 lncRNA upstream 55994 12715933 ~ 12716189 (+) True G114234
TU131076 lncRNA downstream 7398 12780311 ~ 12780669 (+) True G114271
TU131077 lncRNA downstream 37009 12809922 ~ 12810124 (+) True G114272
TU130978 lncRNA downstream 40767 12813680 ~ 12817484 (+) False G114235
TU130979 lncRNA downstream 40767 12813680 ~ 12817484 (+) False G114235
TU130980 lncRNA downstream 40767 12813680 ~ 12817484 (+) False G114235
XM_036938166.1 mRNA upstream 92033 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 155986 12562343 ~ 12616197 (+) False LOC110513835
XM_036938231.1 mRNA downstream 140718 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 153908 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 273966 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 273966 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 273966 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 9356 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 50868 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 51490 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1062406 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1289442 11477976 ~ 11482741 (+) True G113313
TU131145 other downstream 176447 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 849064 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 928697 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1188348 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1368969 14141882 ~ 14144267 (+) True G115190

Expression Profile