RNA id: TU130980


Basic Information

Item Value
RNA id TU130980
length 3548
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G114235
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12813680 ~ 12817484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taTGCATTTTACACACATTGTAAAAGGAAATTAGCAAACTAATATACAGATACCTTTAAATGCcattctagcctggtcccagatctgtgtgtgtcctctgtccATCTCCTTTGGTCATTACCACATCAAACACAGATCTGGGGACAGGATAATGTCATTCTGCACAAATTAGAAAATCTAACTGGCACTAGTGTTTAAAGTATAGGAAAGGAAATGGGAAGGGCAGAGAATTAAACCAACAGGAAATGGACAGGGCAGAGAATTAAACCAACAGGAAATGGACAGGGCAGAGAATTAAACCAACAGGAAATGGACAGGGCAGAGAATTAAACCAACAGGAAATGGACAGTGCAGAGAATTAAACCAACAGGAAATGGACAGTGCAGAGAATGAATCAGGGAATAAACACAGACAACGtgtgtgaggggaggagaggcagcagcatttaaatcagtccagagatgtcatcattcagccacatGTCTTCACAGACCGGCAGGAGACACGGAACAGACGCCATGCGGCCCTGATGGCACACTACTCTCTAGATAGTACACTACCTGTGCACTGTGTCGGGGAATAGACTGTCATTTGAGACACAGACAGGAATAGGGGTCAACTGATGATATCCCCGTACATACACTCTGAGCATTGCAGTACATTTATGGAACCAGTCTGGTTAACAGCAGGAGACTCTGGCCTCCTGTTATTTGCGTAGCATTTGTAAAGCGTattagacaacaacaacaaacaagcagcctgtatatattcctgtgtttATTTTGACATGTTTAACCACATGGTGTAGACATGCTGCACCAGGTGGAGTAGTCTGGGGGATGACAAAACAGACGTCGTCAAGGGTTACCAGGAACAAGAGTTCTCAAGAGCCTGAGTGCTGTCTTTGGTAGGCAATTGAACAAGACGTGTAAAGTCTACCACAGTATTATGAAGCCCTACTCGTCTAGTATCTCTCCTGGCATGGTCGAGAGAGACCATCTGACATCTGTTGTTTTAGCTTTTTAAAGTCTAGAAGGAGGTGGAGAGATGCAGACGATTAGAAAGAGGAAAAACAGCTTTTCCTTTTCAAAAAGGCACAATGAGTAATAACCAacgtatataaaccctggattttTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggCCATATTGGCTCTCCCCAGTAGGGGATGGATTACTGATgttatgtattggccattgagatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCCCCAGTAGGGGATGGATTACTGATGTTGTTATGTGTTGGCCATTGAgatgctttgaagccaccggtcggccatattggctctCTCCATTAGGAGCAggcctccataggaatgaatggaattctacagtgtttcaatcaaatgttttttttgttttagtggggacagtaacatgaATCTAAAAAGGAAAAtgttatatattattttatttgtacgTTTAGCTCACATTATATAATGTAAAAatattaaggtgtctgtaatggaatacatgttgttaaaaccaattaataaatacatttctttAGCTTCCAAAACATTGTTTTggcacggtggcttcaacacagcgccccctgtcagtcatctagtgtatatataaaccaTTGGTTATAACAGATATGAAAGTTATCTTATTATGTGAGGTGAAAGATTCTTCagcctgaaaaaaaaaaaaaagcacaattTTATTTTACTGACGGTTGAAAAATATttgttaaacaatttcaaggaaGTGACTCTCTCATTGGTGGGTTGTGGCTATTATAATTAACCCTCAGCGTGATTCATCCATCTTCGGGATGTTTAAACCATGGCCTTCCAGAGACCCAGCTCTACTTCTACCTAGCAACAGTACTCTGCTCCAGTACTTTGTCCCTCTCAGCTAGCCGTAGATAAACTACTACCAGGCTTTTAAATTCCTTCCAGCGGACTAGTATCGAATTATAATAAGTACAAATCATCACTTAACAGAAGTGGCTTAATTATAAACTCATTTTAAAACTGAAGAGAACACGAAGGATAGTATTGCCTGGTTCATATTAAAGTTCAACTTGGCGTTTTGAGAGCTTGAAGGTTCCTGAACGTTGCGTCCTGATCCCCAGCTTGACTGACAGTCCGCCTGGGGGTCAGTGACGGGTCTCTTTCACTCCTGCTTGTGAGGCGGGACAGCAGCCAGTCGGAACACTGCAATAGGGGTCACATGACAGGAAACAACAGCCTTCACCTTGCTGTTATTAAAACAAGTCCTACTGACTGAGCTGAGGTTTCTCCACACTTCTGGACGACAGAAATGTCCATTCAAAGCTTTTGTCTTCTggggaagaaagaaaaaaaattatTCTGTGAAACCAAAAACTGGTGTTTTTAGGTCAGATGTCAGTCTGAATACAGGAGGTCTGGAACAGGCTGGAGGGACGGGCCTGCAGGTTGTTGTTGttctcctgcagcagctgtccaACGGGAAGGGCTCCTCCTGTAATACAGTCACAATCTGCCTTCGTAGGACACACCTGGTTGATGTTTTCCTCTGCTATCAGACACCTCGGGGAGACGGACACCTCGGGACAGGGCGAAGAGACCGGGGAGTGAGGCTGGGAGAGGACACCTCGGGGTGAGGGTAACGCCTCCAGCCGGTCTCCCTCTACTTCAGGCAGAGGGCTGACTGTGGCGAAGCGGCTGTGGTAGTCAGACGAGGATCCGTGGCTGCAGGACGTCTTCGTGATCTCCAGGTCAGAGCCGCCGCTGAACTCTGACAAGTGGGAGGAGTGAGAGTCGGCTACGGAGGGCAGAGAGCCGCTGAGGTAGGGAGAGTCAAACTCTGAGGAGTTGGTGCTCTGCTGCTCAAGGAGACGAGCGTCCATATCCTCCCTCGTCTCCTGGATCTTACAGCCTCCTCCCTTCTTCAGCTTGCTTTTACTCTTCTTCcccgaggaagaggaggaggacttgGCGGTGCCATCCTGGCCCTCTGAGGGGCATCCAGAGTGGCAGGACCAGCCACAGCGCCCAGCGTCTCTCCCATCATCCATAGCGTGGTCGTGTAGTTGACCAGCGGACTTACCCGGCTCTATGTCCACCTGCACCTCCATACTGGTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131077 lncRNA upstream 3556 12809922 ~ 12810124 (+) True G114272
TU131076 lncRNA upstream 33011 12780311 ~ 12780669 (+) True G114271
TU131075 lncRNA upstream 40767 12772183 ~ 12772913 (+) True G114270
TU131073 lncRNA upstream 43917 12769345 ~ 12769763 (+) True G114268
TU131064 lncRNA upstream 62366 12750848 ~ 12751314 (+) True G114259
TU131035 lncRNA downstream 3973 12821457 ~ 12822074 (+) True G114238
TU131034 lncRNA downstream 5496 12822980 ~ 12823190 (+) True G114237
TU131036 lncRNA downstream 6264 12823748 ~ 12824903 (+) True G114239
TU131078 lncRNA downstream 9036 12826520 ~ 12826808 (+) True G114273
TU131084 lncRNA downstream 21261 12838745 ~ 12839087 (+) True G114279
XR_005035120.1 mRNA upstream 36848 12716574 ~ 12776832 (+) False spag1b
XM_036938231.1 mRNA downstream 96147 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 109337 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 229395 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 229395 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 229395 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 50853 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 92365 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 92987 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1103903 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1330939 11477976 ~ 11482741 (+) True G113313
TU131145 other downstream 131876 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 804493 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 884126 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1143777 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1324398 14141882 ~ 14144267 (+) True G115190

Expression Profile