RNA id: TCONS_00028136


Basic Information

Item Value
RNA id TCONS_00028136
length 611
RNA type processed_transcript
GC content 0.37
exon number 2
gene id XLOC_014118
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29854223 ~ 29860334 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcctggagatcaaacttcctgcagagttcagctgcaaaTAAACCACAACTAAGGATCACTCATATGCATTACCTGCAGATCTGCCAGGACTAAAGACCAAACTCGTGGAAGCCTTGGCTAGAGTGGAGATTCTGGAGAGACACATGAGGAACATGAAGAAACGAGAACAGAGAGTAAAGAACATGGTGCTGGCTGTGCTGAAGGATCTGGGGGGAAAGAACCTCATGAACAAAGAACTGAAACGCAAGCTCAGAATCTACTTGAGGAAAATGAAAGGTTGAATTTTGGGTATCTTCTGTTTACACTATCCTTTTGTTGGAATTCTTACAGGGAATGAGTTTGAAGTTCTGAACTTAAATGAAAGATCAGATACTATGCAGGATTTCTATTCTAGTATTTGACAGCTCAAGTTCATTGTACACTTCTGTAGATTGGAGTCCTGCATTTGATATTTATATGATGTGATTTTTGAAGGAAAAGACTCATCAACTCAAAATGTATGcagattgatttgtttgtttgtgaaatgAAGCTAttcctgtatttttataattattgtgtGTAAAGAGAAATAACTTATGAGCAAATATTTagataataaatcattcaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-41 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to several human genes including THAP6 (THAP domain containing 6).

Ensembl:

ensembl_id ENSDART00000171266

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029954 lncRNA upstream 43304 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA upstream 43304 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028130 lncRNA upstream 44198 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029952 lncRNA upstream 107293 29746138 ~ 29751743 (+) False XLOC_014115
TCONS_00028144 lncRNA downstream 727532 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA downstream 727532 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00029723 lncRNA downstream 864662 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00029955 lncRNA downstream 939718 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029956 lncRNA downstream 971956 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00028135 mRNA upstream 2000 29854282 ~ 29857036 (+) False XLOC_014118
TCONS_00028128 mRNA upstream 37435 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028129 mRNA upstream 40388 29808699 ~ 29818648 (+) False XLOC_014117
TCONS_00028131 mRNA upstream 43670 29808722 ~ 29815366 (+) False XLOC_014117
TCONS_00028127 mRNA upstream 58224 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028137 mRNA downstream 527665 30387999 ~ 30399178 (+) False XLOC_014119
TCONS_00028138 mRNA downstream 527852 30388186 ~ 30399876 (+) True XLOC_014119
TCONS_00028139 mRNA downstream 562783 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028140 mRNA downstream 589791 30450125 ~ 30468234 (+) True XLOC_014121
TCONS_00028141 mRNA downstream 634775 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028123 other upstream 538153 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 655779 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 1524872 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 1527939 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 1543083 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028142 other downstream 658121 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 770609 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 1019454 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028153 other downstream 1024650 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 1024978 30885312 ~ 30891010 (+) True XLOC_014132

Expression Profile

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