RNA id: TU131035


Basic Information

Item Value
RNA id TU131035
length 441
lncRNA type intronic
GC content 0.38
exon number 2
gene id G114238
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12821457 ~ 12822074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctgtcatactactatgactgaccctgtaaaacaacacctatcatactaatacgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactaatacgaccctgtaaaacaacgcctatcatactactatgactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctattatactactatgactgaccctgtaaaacaacacctattatactactatgactgaccctgtaaaacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130978 lncRNA upstream 3973 12813680 ~ 12817484 (+) False G114235
TU130979 lncRNA upstream 3973 12813680 ~ 12817484 (+) False G114235
TU130980 lncRNA upstream 3973 12813680 ~ 12817484 (+) False G114235
TU130981 lncRNA upstream 3973 12813680 ~ 12817484 (+) False G114235
TU130982 lncRNA upstream 3973 12813680 ~ 12817484 (+) False G114235
TU131034 lncRNA downstream 906 12822980 ~ 12823190 (+) True G114237
TU131036 lncRNA downstream 1674 12823748 ~ 12824903 (+) True G114239
TU131078 lncRNA downstream 4446 12826520 ~ 12826808 (+) True G114273
TU131084 lncRNA downstream 16671 12838745 ~ 12839087 (+) True G114279
TU131107 lncRNA downstream 30989 12853063 ~ 12854732 (+) True G114292
XR_005035120.1 mRNA upstream 44625 12716574 ~ 12776832 (+) False spag1b
XM_036938231.1 mRNA downstream 91557 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 104747 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 224805 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 224805 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 224805 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 58630 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 100142 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 100764 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1111680 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1338716 11477976 ~ 11482741 (+) True G113313
TU131145 other downstream 127286 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 799903 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 879536 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1139187 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1319808 14141882 ~ 14144267 (+) True G115190

Expression Profile