RNA id: TU131101


Basic Information

Item Value
RNA id TU131101
length 382
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G114286
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12924472 ~ 12925273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAAAGTGTTTGATATCTTTATTTAGCAGTTTTCAATCCAAATGACAAAGCACTCAGCTATCTGATCTCTGAACACAACAGCTGATATTCTGAGGACTGATACTTACCGGTTCTTAGCTGGGGACTCCGGCGGGGTTGGTGGGCTTCTGGGCGGACTCCTTGGCCTGGTGAGCCTGCAGCACAGCAACAGCCTCGTCCACCTTGGAGCGGAGAGACTCGGGAGACTCCAGCATGTGGAGCAACTCGGAGTTGTCTATCTCCAACAGCATGCCGGTGATCTTTCCAGCCAGGCTGGGGTGCATGTTTTGGATGAGAGGGAACAGACGCTCGCCTGGAgaatgaggagagggggagagagaggagaattcAGCATCAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131112 lncRNA upstream 53211 12867943 ~ 12871261 (+) True G114297
TU131107 lncRNA upstream 69740 12853063 ~ 12854732 (+) True G114292
TU131084 lncRNA upstream 85385 12838745 ~ 12839087 (+) True G114279
TU131078 lncRNA upstream 97664 12826520 ~ 12826808 (+) True G114273
TU131036 lncRNA upstream 99569 12823748 ~ 12824903 (+) True G114239
TU131139 lncRNA downstream 12300 12937573 ~ 12938036 (+) True G114319
TU131140 lncRNA downstream 18923 12944196 ~ 12969839 (+) False G114320
TU131141 lncRNA downstream 18923 12944196 ~ 12946435 (+) True G114320
TU131143 lncRNA downstream 26524 12951797 ~ 12954057 (+) True G114322
TU131153 lncRNA downstream 63152 12988425 ~ 12988629 (+) True G114330
XM_036938231.1 mRNA upstream 7674 12913631 ~ 12916798 (+) True LOC110525149
XR_005035120.1 mRNA upstream 147640 12716574 ~ 12776832 (+) False spag1b
XR_005035129.1 mRNA downstream 1548 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 121606 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 121606 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 121606 13046879 ~ 13061306 (+) False LOC110507515
XM_036938278.1 mRNA downstream 121606 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 161645 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 203157 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 203779 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1214695 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1441731 11477976 ~ 11482741 (+) True G113313
TU131145 other downstream 24087 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 696704 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 776337 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1035988 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1216609 14141882 ~ 14144267 (+) True G115190

Expression Profile