RNA id: TU131143


Basic Information

Item Value
RNA id TU131143
length 1396
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G114322
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12951797 ~ 12954057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcttcctggggtttattatggaaccccattagttcctgccaatgcagcagctactcttcctggggtttattatggatccccattagttcctgataaggcagcagctagtcttcctggggtttattatggatccccattagtttctgccatggtagcagctactcttcttggggttttcttatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagtttctgccaaggcagcagctactcttcctggggtttattatggacccccattagtttctgccaaggtagcagctactctttctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagtttctgccaaggtagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgacaagacagcagctactcttcctgtggtttagtatggatccccattagttcctgccaaggcagcagctactcttcctggagtttattatggatccccattagttcctgccaaggcagcagctactcttcctggggtttattatagacccccattagttcctgccaagacagcagctactcttcctgtggtttattatggatccccattagttcctgccagggcagcagctactcttcctgggtttattatggattcccattagttcctgccaaggcagcagctactcttcctggggtttattatggacccccattagttcctgccaaggcagcagctactcttcctgaggtttattatggatccccattggttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtctttctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtctttctggggtttattatggatccccattagttcctgccaaggcagcagatactcttcctggggtttattatggatccccattagttcctgcctaggcagcaactactcttcctggggtttattatggaaccccattagttcctgccaatgcagcagctactcttcctggggtttattatggatccccattagttcctgataaggcagcagctagtcttcctggggttttattatggatccccattagttcctgccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131141 lncRNA upstream 5362 12944196 ~ 12946435 (+) True G114320
TU131139 lncRNA upstream 13761 12937573 ~ 12938036 (+) True G114319
TU131101 lncRNA upstream 26524 12924472 ~ 12925273 (+) True G114286
TU131112 lncRNA upstream 80536 12867943 ~ 12871261 (+) True G114297
TU131107 lncRNA upstream 97065 12853063 ~ 12854732 (+) True G114292
TU131153 lncRNA downstream 34368 12988425 ~ 12988629 (+) True G114330
TU131158 lncRNA downstream 53626 13007683 ~ 13007906 (+) True G114335
TU131456 lncRNA downstream 136020 13090077 ~ 13090488 (+) True G114537
TU131481 lncRNA downstream 167867 13121924 ~ 13122191 (+) True G114553
TU131482 lncRNA downstream 169452 13123509 ~ 13123745 (+) True G114554
XR_005035129.1 mRNA upstream 24095 12926821 ~ 12927702 (+) True LOC118937726
XM_036938231.1 mRNA upstream 34999 12913631 ~ 12916798 (+) True LOC110525149
XR_005035124.1 mRNA upstream 174965 12716574 ~ 12776832 (+) False spag1b
XM_036938259.1 mRNA downstream 92822 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 92822 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 92822 13046879 ~ 13061306 (+) False LOC110507515
XM_036938278.1 mRNA downstream 92822 13046879 ~ 13061306 (+) False LOC110507515
XM_036938281.1 mRNA downstream 92822 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 188970 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 230482 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 231104 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1242020 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1469056 11477976 ~ 11482741 (+) True G113313
TU131856 other downstream 667920 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 747553 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1007204 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1187825 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 1280457 14234514 ~ 14236854 (+) True G115189

Expression Profile