RNA id: TU131158


Basic Information

Item Value
RNA id TU131158
length 224
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G114335
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13007683 ~ 13007906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttgtcccgaagccactcctgagttgtcttggctgtgtgcttagggtcgttgtcctgttggaagatgaaccttcgccacagtctgaggtcctgaacactctggagcaggttttcatcaaggatctctctgtactttgctctgttagtctttacctcgatcctgaccagtccctgccgctgaaaaacatccccacagcatgatgctgccaccaccatacttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131153 lncRNA upstream 19054 12988425 ~ 12988629 (+) True G114330
TU131140 lncRNA upstream 37844 12944196 ~ 12969839 (+) False G114320
TU131143 lncRNA upstream 53626 12951797 ~ 12954057 (+) True G114322
TU131141 lncRNA upstream 61248 12944196 ~ 12946435 (+) True G114320
TU131139 lncRNA upstream 69647 12937573 ~ 12938036 (+) True G114319
TU131456 lncRNA downstream 82171 13090077 ~ 13090488 (+) True G114537
TU131481 lncRNA downstream 114018 13121924 ~ 13122191 (+) True G114553
TU131482 lncRNA downstream 115603 13123509 ~ 13123745 (+) True G114554
TU131529 lncRNA downstream 129493 13137399 ~ 13137614 (+) True G114598
TU131534 lncRNA downstream 158458 13166364 ~ 13166592 (+) True G114603
XR_005035129.1 mRNA upstream 79981 12926821 ~ 12927702 (+) True LOC118937726
XM_036938231.1 mRNA upstream 90885 12913631 ~ 12916798 (+) True LOC110525149
XR_005035124.1 mRNA upstream 230851 12716574 ~ 12776832 (+) False spag1b
XM_036938259.1 mRNA downstream 38973 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 38973 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 38973 13046879 ~ 13061306 (+) False LOC110507515
XM_036938278.1 mRNA downstream 38973 13046879 ~ 13061306 (+) False LOC110507515
XM_036938281.1 mRNA downstream 38973 13046879 ~ 13061306 (+) False LOC110507515
TU131145 other upstream 42753 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 244856 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 286368 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 286990 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1297906 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 614071 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 693704 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 953355 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1133976 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 1226608 14234514 ~ 14236854 (+) True G115189

Expression Profile