RNA id: TU131540



Basic Information


Item Value
RNA id TU131540
length 261
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G114609
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13174245 ~ 13174505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttcatgaggtagttacttggaatgcatttctattaacaggtgtaccttgttaaaagttactttgtggaatttctttccttcttaatgcgtttgagcctatcagttgtgctgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaagaccaggtccatattatggcaagaacagctcaaataagcaaagagaatgaTTGTATTGTCACagaggtgcagtgaaatgtgttgattTACAggatcagccatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131534 lncRNA upstream 7653 13166364 ~ 13166592 (+) True G114603
TU131529 lncRNA upstream 36631 13137399 ~ 13137614 (+) True G114598
TU131482 lncRNA upstream 50500 13123509 ~ 13123745 (+) True G114554
TU131481 lncRNA upstream 52054 13121924 ~ 13122191 (+) True G114553
TU131456 lncRNA upstream 83757 13090077 ~ 13090488 (+) True G114537
TU131542 lncRNA downstream 1339 13175844 ~ 13176085 (+) True G114611
TU131553 lncRNA downstream 11573 13186078 ~ 13186773 (+) True G114617
TU131556 lncRNA downstream 15570 13190075 ~ 13190306 (+) True G114620
TU131586 lncRNA downstream 72257 13246762 ~ 13247908 (+) False G114643
TU131583 lncRNA downstream 72457 13246962 ~ 13248211 (+) False G114643
XM_036938278.1 mRNA upstream 112939 13046879 ~ 13061306 (+) False LOC110507515
XM_036938340.1 mRNA downstream 18640 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA downstream 18643 13193148 ~ 13241855 (+) True LOC118936508
XM_036938407.1 mRNA downstream 150432 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 150452 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 150456 13324961 ~ 13329430 (+) False LOC110507612
TU131145 other upstream 209315 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 411418 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 452930 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 453552 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1464468 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 447472 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 527105 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 786756 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 967377 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 1060009 14234514 ~ 14236854 (+) True G115189

Expression Profile