RNA id: TU131553


Basic Information

Item Value
RNA id TU131553
length 630
lncRNA type intronic
GC content 0.38
exon number 2
gene id G114617
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13186078 ~ 13186773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacctttatttaaccaggttggctagttgagaacacctttatttaaccaggttggctagttgagaacacctttatttaaccaggttggctagttgagaacacctttatttaaccaggttggctagttgagaacacctttatttaaccaggttggcaagttgagaacaagttctcatttacaattgcgacctggtcaagataaagcaaagcagttcgacacatacaacaacacagagttacacatggagtaaaacaaacacagtcaataacacagtagaaacaagcctatatacgatgtgagcaaatgaggtgagataaggggggtaaaggcaaaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcagtggaagaatgtgcaaagtagaaataaaaataatggggtgcaaaggagctaaataaataaataaataaataaaataaaataaattcagtagggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatttgtgagctgctctgacagctggtgcttaaagctagtgagggagataagtgtttccagtttcagagatttttgaagttcgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131542 lncRNA upstream 9993 13175844 ~ 13176085 (+) True G114611
TU131540 lncRNA upstream 11573 13174245 ~ 13174505 (+) True G114609
TU131534 lncRNA upstream 19486 13166364 ~ 13166592 (+) True G114603
TU131529 lncRNA upstream 48464 13137399 ~ 13137614 (+) True G114598
TU131482 lncRNA upstream 62333 13123509 ~ 13123745 (+) True G114554
TU131556 lncRNA downstream 3302 13190075 ~ 13190306 (+) True G114620
TU131586 lncRNA downstream 59989 13246762 ~ 13247908 (+) False G114643
TU131583 lncRNA downstream 60189 13246962 ~ 13248211 (+) False G114643
TU131584 lncRNA downstream 60189 13246962 ~ 13247844 (+) False G114643
TU131585 lncRNA downstream 60189 13246962 ~ 13247908 (+) True G114643
XM_036938278.1 mRNA upstream 124772 13046879 ~ 13061306 (+) False LOC110507515
XM_036938340.1 mRNA downstream 6372 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA downstream 6375 13193148 ~ 13241855 (+) True LOC118936508
XM_036938407.1 mRNA downstream 138164 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 138184 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 138188 13324961 ~ 13329430 (+) False LOC110507612
TU131145 other upstream 221148 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 423251 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 464763 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 465385 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1476301 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 435204 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 514837 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 774488 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 955109 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 1047741 14234514 ~ 14236854 (+) True G115189

Expression Profile