RNA id: TU131596


Basic Information

Item Value
RNA id TU131596
length 213
lncRNA type intronic
GC content 0.41
exon number 1
gene id G114653
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13266158 ~ 13266370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcggttttgtctcaccaggggtgatggttggattctggttttattgtcaaaggaatgagcattacaccgaggcctgtactctggagcgggatcgatttggaggtggagggtccgtcatggtctatcacagcatcatcggactgagcttgttgtcattgcctgcaatctcaacgctgtgcgttacagggaagccatcctcctccctcatgtggt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131595 lncRNA upstream 551 13265328 ~ 13265607 (+) True G114652
TU131591 lncRNA upstream 6513 13259358 ~ 13259645 (+) True G114648
TU131583 lncRNA upstream 17947 13246962 ~ 13248211 (+) False G114643
TU131586 lncRNA upstream 18250 13246762 ~ 13247908 (+) False G114643
TU131598 lncRNA downstream 974 13267344 ~ 13267562 (+) True G114655
TU131599 lncRNA downstream 36677 13303047 ~ 13304633 (+) True G114656
TU131637 lncRNA downstream 62246 13328616 ~ 13329872 (+) False LOC110507612
TU131639 lncRNA downstream 62246 13328616 ~ 13329872 (+) False LOC110507612
TU131640 lncRNA downstream 62246 13328616 ~ 13329872 (+) True LOC110507612
XM_036938340.1 mRNA upstream 24303 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA upstream 24303 13193148 ~ 13241855 (+) True LOC118936508
XM_036938285.1 mRNA upstream 204852 13046879 ~ 13061306 (+) False LOC110507515
XM_036938407.1 mRNA downstream 58567 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 58587 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 58591 13324961 ~ 13329430 (+) False LOC110507612
XM_036938394.1 mRNA downstream 58591 13324961 ~ 13330676 (+) False LOC110507612
XM_036938404.1 mRNA downstream 58592 13324962 ~ 13329671 (+) False LOC110507612
TU131145 other upstream 301228 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 503331 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 544843 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 545465 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1556381 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 355607 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 435240 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 694891 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 875512 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 968144 14234514 ~ 14236854 (+) True G115189

Expression Profile