RNA id: TU131599


Basic Information

Item Value
RNA id TU131599
length 407
lncRNA type intronic
GC content 0.34
exon number 2
gene id G114656
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13303047 ~ 13304633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggctaattttcatcataggtacacttcaactatgacagacaaaatgagaagaaaaaaaatccagaaagtcacattgtaggatttttaatgaatttatttgccaccatttgcaagtaaattcattaaaaatcctacaatgtgattttctggaattttttttctaattttgtctgtcatagttgaagtgtacctatgatgaaaattacctgcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtgtgtgtgtgtgtatatgtatatgtgtgtgtgtgtgtgtatgtatatgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtatgtatatgtgtgtgtgtgtatatgtatatgtgtgtgtgtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131598 lncRNA upstream 35485 13267344 ~ 13267562 (+) True G114655
TU131596 lncRNA upstream 36677 13266158 ~ 13266370 (+) True G114653
TU131595 lncRNA upstream 37440 13265328 ~ 13265607 (+) True G114652
TU131591 lncRNA upstream 43402 13259358 ~ 13259645 (+) True G114648
TU131585 lncRNA upstream 55139 13246962 ~ 13247908 (+) True G114643
TU131637 lncRNA downstream 23983 13328616 ~ 13329872 (+) False LOC110507612
TU131639 lncRNA downstream 23983 13328616 ~ 13329872 (+) False LOC110507612
TU131640 lncRNA downstream 23983 13328616 ~ 13329872 (+) True LOC110507612
TU131642 lncRNA downstream 26125 13330758 ~ 13332229 (+) False G114687
TU131643 lncRNA downstream 26125 13330758 ~ 13332453 (+) False G114687
XM_036938340.1 mRNA upstream 61192 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA upstream 61192 13193148 ~ 13241855 (+) True LOC118936508
XM_036938285.1 mRNA upstream 241741 13046879 ~ 13061306 (+) False LOC110507515
XM_036938407.1 mRNA downstream 20304 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 20324 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 20328 13324961 ~ 13329430 (+) False LOC110507612
XM_036938394.1 mRNA downstream 20328 13324961 ~ 13330676 (+) False LOC110507612
XM_036938404.1 mRNA downstream 20329 13324962 ~ 13329671 (+) False LOC110507612
TU131145 other upstream 338117 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 540220 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 581732 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 582354 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1593270 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 317344 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 396977 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 656628 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 837249 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 929881 14234514 ~ 14236854 (+) True G115189

Expression Profile