RNA id: TCONS_00028143


Basic Information

Item Value
RNA id TCONS_00028143
length 790
lncRNA type lincRNA
GC content 0.34
exon number 4
gene id XLOC_014124
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30587866 ~ 30589951 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttagaaaaaaaaacaaccattttgtttttttgtggctGTGGAGACTATCTCTTGAATCCAActcccaacaaacacacaacgttgccgtaacgtagcgaccttcctacaacgttgtaccaaccttgcaaaaaggttgaggattctacgttgttgctaaacgttgtcacaacgatgtcataaggttgccatttaaacatcacGAGGGCCGCATACTTTAGGTTGTGCTTAGGTGGCGTGGACaaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacgaccgaggagacGCTATTTTCACATGGAGGAAATCTTCTATTGATAATTTCTGGGTTTTAAGTATGTGTAAGTTGCATAAAACTCTATTGTTTAAccactcactgttgttttcaaattctttatgtaacttgtctttcagaatTTTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCTGATCTATGGAAAGAATAATTGAATGAGcgagcaacgccacaactacaggacctctttctcttctcataatttaactgcgctccccggtctgctgtattctccagtccagaGCTTCATTGCCCAGTGTCTGAATtttaatttctatatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttacatttttaatgatttcttgtttacttttcttgtttgtttaccctt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0033157 regulation of intracellular protein transport biological_process
GO:1990399 epithelium regeneration biological_process
GO:0006413 translational initiation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029954 lncRNA upstream 772134 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA upstream 772134 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028130 lncRNA upstream 773028 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029952 lncRNA upstream 836123 29746138 ~ 29751743 (+) False XLOC_014115
TCONS_00029723 lncRNA downstream 135045 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00029955 lncRNA downstream 210101 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029956 lncRNA downstream 242339 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00029724 lncRNA downstream 251688 30841639 ~ 30843233 (+) True XLOC_014130
TCONS_00029725 lncRNA downstream 379061 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00028141 mRNA upstream 71186 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028140 mRNA upstream 119632 30450125 ~ 30468234 (+) True XLOC_014121
TCONS_00028139 mRNA upstream 158965 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028138 mRNA upstream 187990 30388186 ~ 30399876 (+) True XLOC_014119
TCONS_00028137 mRNA upstream 188688 30387999 ~ 30399178 (+) False XLOC_014119
TCONS_00028146 mRNA downstream 43502 30633453 ~ 30683678 (+) False XLOC_014126
TCONS_00028147 mRNA downstream 72578 30662529 ~ 30684874 (+) True XLOC_014126
TCONS_00028148 mRNA downstream 277894 30867845 ~ 30884054 (+) False XLOC_014131
TCONS_00028150 mRNA downstream 294755 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028151 mRNA downstream 295009 30884960 ~ 30891182 (+) False XLOC_014132
TCONS_00028142 other upstream 69293 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028136 other upstream 727532 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028134 other upstream 727660 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028123 other upstream 1266983 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 1384609 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028145 other downstream 40992 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 289837 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028153 other downstream 295033 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 295361 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028165 other downstream 752072 31342023 ~ 31348348 (+) True XLOC_014139

Expression Profile

//