RNA id: TU132023


Basic Information

Item Value
RNA id TU132023
length 229
lncRNA type intronic
GC content 0.49
exon number 1
gene id G114990
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13734728 ~ 13734956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGGGTCGATGGACTTGTCCTAATGGTAGCAGAGTAGTGAGAAACCAGGTTACAAGTGCTCTGCAGTGGTAATTGATGTAGCTGCAGCCTACCGATGTTAAGGATATTGATGTGTTTCCACACCGTGAACACACTCCTACATTAACTGTACTGGAAGGCCTGCGGTGGGCTGagagcatgtctggttggagcaTTGATCAGGTCTTTCACTGTGCTGCTGTTTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131898 lncRNA upstream 16001 13718232 ~ 13718727 (+) True G114904
TU131887 lncRNA upstream 49943 13683696 ~ 13684785 (+) True G114897
TU131680 lncRNA upstream 260981 13441854 ~ 13473747 (+) True G114717
TU131675 lncRNA upstream 303022 13429701 ~ 13431706 (+) True G114712
TU131651 lncRNA upstream 390545 13339715 ~ 13344183 (+) False G114689
TU132038 lncRNA downstream 19968 13754924 ~ 13756558 (+) True LOC110520780
TU132048 lncRNA downstream 26867 13761823 ~ 13762180 (+) True G115009
TU132057 lncRNA downstream 45969 13780925 ~ 13781127 (+) True G115018
TU132075 lncRNA downstream 65949 13800905 ~ 13801181 (+) True G115036
TU132081 lncRNA downstream 71448 13806404 ~ 13806741 (+) True G115042
XM_036938534.1 mRNA upstream 90833 13632935 ~ 13643895 (+) False LOC110520770
XM_036938540.1 mRNA upstream 90833 13634922 ~ 13643895 (+) False LOC110520770
XM_036938538.1 mRNA upstream 90833 13635093 ~ 13643895 (+) False LOC110520770
XM_036938543.1 mRNA upstream 90833 13635096 ~ 13643895 (+) True LOC110520770
XM_036938529.1 mRNA upstream 104149 13625566 ~ 13630579 (+) True LOC110513073
XM_036962031.1 mRNA downstream 180782 13915738 ~ 13920541 (+) True LOC118944102
XM_036961641.1 mRNA downstream 186496 13921452 ~ 13925890 (+) False LOC110535355
XM_021620271.2 mRNA downstream 226064 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA downstream 226064 13961020 ~ 13976561 (+) False LOC110535330
XM_036961817.1 mRNA downstream 293010 14027966 ~ 14042972 (+) False LOC110534090
TU131892 other upstream 25354 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 110763 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 769798 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 971901 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 1013413 12720730 ~ 12721315 (+) True G114244
TU132139 other downstream 226305 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 406926 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 499558 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 671088 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 821499 14556455 ~ 14565113 (+) True sec61b

Expression Profile