RNA id: TU132048


Basic Information

Item Value
RNA id TU132048
length 358
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G115009
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13761823 ~ 13762180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggcgatgagaaaaatacgcgcaagggtggaccttgtcgtcagagagggagcgctgagaaagaatggctcccacgcccacctctgacgcgtcaacctcgacaacgaactgtctagtgacgtcaggtgtaacaaggataggtgcggatgtaaaatgattcttgaggagatcaaaagctccctgggcggaaacggaccacttaaagcacgtcttgacagaagtaagggctgtgagaggagctgccacctgaccgaaattacggatgaaacgacgatagaagttcgcgaagccgagaaagcgctgcagctcgacgcgtgacttagggacgggccaatcaatgacagcttggaccttagcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132038 lncRNA upstream 5265 13754924 ~ 13756558 (+) True LOC110520780
TU132023 lncRNA upstream 26867 13734728 ~ 13734956 (+) True G114990
TU131898 lncRNA upstream 43096 13718232 ~ 13718727 (+) True G114904
TU131887 lncRNA upstream 77038 13683696 ~ 13684785 (+) True G114897
TU131680 lncRNA upstream 288076 13441854 ~ 13473747 (+) True G114717
TU132057 lncRNA downstream 18745 13780925 ~ 13781127 (+) True G115018
TU132075 lncRNA downstream 38725 13800905 ~ 13801181 (+) True G115036
TU132081 lncRNA downstream 44224 13806404 ~ 13806741 (+) True G115042
TU132083 lncRNA downstream 45586 13807766 ~ 13807965 (+) True G115044
TU132123 lncRNA downstream 143152 13905332 ~ 13932445 (+) True G115075
XM_036938564.1 mRNA upstream 5793 13663839 ~ 13756030 (+) False LOC110520780
XM_036938534.1 mRNA upstream 117928 13632935 ~ 13643895 (+) False LOC110520770
XM_036938540.1 mRNA upstream 117928 13634922 ~ 13643895 (+) False LOC110520770
XM_036938538.1 mRNA upstream 117928 13635093 ~ 13643895 (+) False LOC110520770
XM_036938543.1 mRNA upstream 117928 13635096 ~ 13643895 (+) True LOC110520770
XM_036962031.1 mRNA downstream 153558 13915738 ~ 13920541 (+) True LOC118944102
XM_036961641.1 mRNA downstream 159272 13921452 ~ 13925890 (+) False LOC110535355
XM_021620271.2 mRNA downstream 198840 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA downstream 198840 13961020 ~ 13976561 (+) False LOC110535330
XM_036961817.1 mRNA downstream 265786 14027966 ~ 14042972 (+) False LOC110534090
TU131892 other upstream 52449 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 137858 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 796893 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 998996 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 1040508 12720730 ~ 12721315 (+) True G114244
TU132139 other downstream 199081 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 379702 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 472334 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 643864 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 794275 14556455 ~ 14565113 (+) True sec61b

Expression Profile