RNA id: TU132123



Basic Information


Item Value
RNA id TU132123
length 1048
lncRNA type read_through
GC content 0.42
exon number 2
gene id G115075
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13905332 ~ 13932445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagagacaggAATGCAAAGACTGttacaaaaacaaacattttttgtGTGCTTGAGGTGTCATCATCAGATGTCTTAATGCCTTGTCCTAACAGTGTGGCCACCTACCTTGAAACTTGATTAAGTGGTTGAGTTCTAATTCTTCAGCATTATACTGACCTATCTTAACCTCCCGGCCCTCTGTGGAAACACATGCAGTTGATAAATATTTCACAAAGAATGTTCTCTAAATTCATGGAAACACACATATGTAATGTTTACCTTGAAATTGGCTTAATTTAATAGTTCCCATGCGTTCCCCATTTCTAAACATAACTTGACcctaaaaaaaagaagaagaaaggaaACTCAATTTGACAAGAATATTTGTAAAGCACATCTTATCTTTAGTCTTTTGGAGCAACGATCTATCTAAAATGGAATGTTAACAACAGTCATGCTAACTTACAGTTACACCCTCAAAGCAAATCTCCTTCATGGAATCCAGGACCATTTGTCCAATCTCCTTGCTGCTGACTGTGAAGTTCCGGTGGATGTCATATCTCTCTCTGTGACGAACAGACTCAATGACCCTGGTCAATGCTTTCACCATCACCCAAACTCCATCATAGGCAAACCCATGGAACTTGCTGGCAACCAACCCTCTCTGCAGCAGCTCTCTGTTGTAAGTCTCATCATACTCTTCTGGGGTCTAAACAGTTTGTTTGACTTCTCTTAATGGTCTTGCATTACCTTTGCTACACTGCAAATACACTGTTTGATGTTTTCAACATTACATCCACATTTTTTGTTATAAACACAAGTTATCCATTGGAGAGAGCATGGTACAGTATCGACAGAATATGTTGTCCCTTGCTGAAAACCTCAGTACCTACCCTTCCTGAGATGCCTTTAATCTGTCTGTTACTGAGGTGTGTGAAGTCCACAGTGATGTAGCCTTCCATTGCAGTCAGCAGGTTGTTTGAAGCACAGTTGGAGGAGTTGGCCTCCTCCCACCAGCTCCCCTGGTAACCGCCAGGGAGGATCCACTGATACCTCCCGCCAAACATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132083 lncRNA upstream 97367 13807766 ~ 13807965 (+) True G115044
TU132081 lncRNA upstream 98591 13806404 ~ 13806741 (+) True G115042
TU132075 lncRNA upstream 104151 13800905 ~ 13801181 (+) True G115036
TU132057 lncRNA upstream 124205 13780925 ~ 13781127 (+) True G115018
TU132048 lncRNA upstream 143152 13761823 ~ 13762180 (+) True G115009
TU132192 lncRNA downstream 10857 13943302 ~ 13944926 (+) False G115129
TU132195 lncRNA downstream 10857 13943302 ~ 13944121 (+) False G115129
TU132196 lncRNA downstream 11197 13943642 ~ 13945357 (+) False G115129
TU132191 lncRNA downstream 11464 13943909 ~ 13945357 (+) False G115129
TU132197 lncRNA downstream 11464 13943909 ~ 13946788 (+) False G115129
XM_036938564.1 mRNA upstream 149302 13663839 ~ 13756030 (+) False LOC110520780
XM_036938534.1 mRNA upstream 261437 13632935 ~ 13643895 (+) False LOC110520770
XM_021620271.2 mRNA downstream 28575 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA downstream 28575 13961020 ~ 13976561 (+) False LOC110535330
XM_036961817.1 mRNA downstream 95521 14027966 ~ 14042972 (+) False LOC110534090
XM_036961822.1 mRNA downstream 95521 14027966 ~ 14042972 (+) False LOC110534090
XM_036961826.1 mRNA downstream 95521 14027966 ~ 14042972 (+) False LOC110534090
TU131892 other upstream 195958 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 281367 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 940402 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 1142505 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 1184017 12720730 ~ 12721315 (+) True G114244
TU132139 other downstream 28816 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 209437 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 302069 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 473599 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 624010 14556455 ~ 14565113 (+) True sec61b

Expression Profile