RNA id: TU132198


Basic Information

Item Value
RNA id TU132198
length 446
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G115129
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13943302 ~ 13946788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctacatgtgagaaatacatctacaaagtccatgtacacacactagcatactgtcctacatgtgagaaatacatctacaaagtccatgtacacacactagcatactgtcctacatgtgagaaatacatcaagtccatgtacacacactagcatactgtcctacatgtgataaatacatctacaaagtccatgtacacacactagcatactgtcctacatgtgataaatacatctacaaagtccatgtacacacactagcatactgtcctacatgtgagaaatacatctacaaagtccatgtacacacactagcatactgtcctacatgtgagaaatacatctgtaaagtccatgtacacacacttgcatactgtcctacatgtgagaaatacatctacaaagtccatgtacacacacttgcatactgtcctacatgtgaaaATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132195 lncRNA upstream 593 13943302 ~ 13944121 (+) False G115129
TU132115 lncRNA upstream 17526 13925876 ~ 13927188 (+) False LOC110535355
TU132227 lncRNA downstream 90452 14037240 ~ 14037747 (+) True G115153
TU132229 lncRNA downstream 104868 14051656 ~ 14161240 (+) True G115155
TU132238 lncRNA downstream 114547 14061335 ~ 14171570 (+) True G115162
TU132248 lncRNA downstream 119236 14066024 ~ 14175893 (+) True G115170
TU132141 lncRNA downstream 161513 14108301 ~ 14119096 (+) True G115086
XM_036961641.1 mRNA upstream 18824 13921452 ~ 13925890 (+) False LOC110535355
XM_036962031.1 mRNA upstream 24173 13915738 ~ 13920541 (+) True LOC118944102
XM_036938564.1 mRNA upstream 188684 13663839 ~ 13756030 (+) False LOC110520780
XM_036938538.1 mRNA upstream 300819 13635093 ~ 13643895 (+) False LOC110520770
XM_021620271.2 mRNA downstream 14232 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA downstream 14232 13961020 ~ 13976561 (+) False LOC110535330
XM_036961817.1 mRNA downstream 81178 14027966 ~ 14042972 (+) False LOC110534090
XM_036961822.1 mRNA downstream 81178 14027966 ~ 14042972 (+) False LOC110534090
XM_036961826.1 mRNA downstream 81178 14027966 ~ 14042972 (+) False LOC110534090
TU131892 other upstream 235340 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 320749 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 979784 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 1181887 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 1223399 12720730 ~ 12721315 (+) True G114244
TU132139 other downstream 14473 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 195094 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 287726 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 459256 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 609667 14556455 ~ 14565113 (+) True sec61b