RNA id: TU132227


Basic Information

Item Value
RNA id TU132227
length 450
lncRNA type intronic
GC content 0.41
exon number 2
gene id G115153
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14037240 ~ 14037747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGGGTTGTATTTTAGAAGTGCTCTTACAAAGGATCTTGAGACTTTCTCTGCATGTGTAGAGTGATGGCAGTTCCagattggtgtgtgtgtagatggtagGTCCAGATTGGTTTGTGTGTAGATAGTAGGTCCagattggtgtgtgtgtagatggtagGTCCAGAttggtttgtgtatgtgtgtgtttatttattttttgattttaccaggcaagtcagttaagagcaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgatcttgcaacctttcggttactagtccaacgctcaaaacactaggctacactgaaaccaaactatagttttgcaaagtggtttaggacatctactttgtgcatgacgcaagtcatttttcaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132197 lncRNA upstream 90452 13943909 ~ 13946788 (+) False G115129
TU132198 lncRNA upstream 90452 13944714 ~ 13946788 (+) True G115129
TU132196 lncRNA upstream 91883 13943642 ~ 13945357 (+) False G115129
TU132191 lncRNA upstream 91883 13943909 ~ 13945357 (+) False G115129
TU132194 lncRNA upstream 91883 13944447 ~ 13945357 (+) False G115129
TU132229 lncRNA downstream 13909 14051656 ~ 14161240 (+) True G115155
TU132238 lncRNA downstream 23588 14061335 ~ 14171570 (+) True G115162
TU132248 lncRNA downstream 28277 14066024 ~ 14175893 (+) True G115170
TU132141 lncRNA downstream 70554 14108301 ~ 14119096 (+) True G115086
TU132289 lncRNA downstream 128917 14166664 ~ 14168403 (+) True G115198
XM_021620271.2 mRNA upstream 60679 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA upstream 60679 13961020 ~ 13976561 (+) False LOC110535330
XM_036961641.1 mRNA upstream 111350 13921452 ~ 13925890 (+) False LOC110535355
XM_036962031.1 mRNA upstream 116699 13915738 ~ 13920541 (+) True LOC118944102
XM_036938564.1 mRNA upstream 281210 13663839 ~ 13756030 (+) False LOC110520780
XM_036961858.1 mRNA downstream 49272 14087019 ~ 14135046 (+) False LOC110535435
XM_036961867.1 mRNA downstream 49272 14087019 ~ 14135046 (+) False LOC110535435
XM_036961871.1 mRNA downstream 49300 14087047 ~ 14135046 (+) False LOC110535435
XM_036961862.1 mRNA downstream 51456 14089203 ~ 14135046 (+) True LOC110535435
XM_036962057.1 mRNA downstream 71797 14109544 ~ 14230202 (+) False LOC110513267
TU132139 other upstream 74428 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 327866 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 413275 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 1072310 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 1274413 12762232 ~ 12762827 (+) True G114263
TU132281 other downstream 104135 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 196767 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 368297 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 518708 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 715876 14753623 ~ 14770903 (+) False stx17

Expression Profile