RNA id: TCONS_00029723


Basic Information

Item Value
RNA id TCONS_00029723
length 708
lncRNA type intronic
GC content 0.30
exon number 1
gene id XLOC_014127
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30724996 ~ 30725703 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tattttgttctctttgactcaaaCTTTTTTtcgaatgttttatttaatagtaCAGAGTTTAATTGGGATCTTTggttggaaacatagctagtgacacATCTACattaggggtgcccaaacctttttatatgaaaggccaaaaaccaattattatttataaacaaggtaaacataccaaactatattacattgtagttaccatggcttattttcttaatttattagAAAACATGACTTAAAATCATATTAAGTAATGcagaataacatttaaaatgagaAATTATTGCATTAATAGCatgaacaatcacatttataagagtggaattcaatgctgaatacacgaatcaagcagaatctgcctttgccttaatATTTGTCCTCTATCCGTCGGGTGACagtatgtgcatttaaactaaatctgattaatttacaccatttaatattatttcgcttttaacaattaaacaaacaggttacattagatttaaaaatgacaatctctaagcCATCTTCATATTTCCTATCTTTTTAAATGGGATGTGGGCAACATTAAtagttaccatgggccaactttgcccTGTGGGTGCTAGTGTGGACATCTCTGATCTACATAAATACATTACAATTAGATTCATTACACAGATTTCGAATATTGATCTAAACTTCTTGCCAAATGAACACAGACagccttaaaaatataaatgaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028144 lncRNA upstream 135045 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA upstream 135045 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00029954 lncRNA upstream 909264 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA upstream 909264 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028130 lncRNA upstream 910158 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029955 lncRNA downstream 74349 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029956 lncRNA downstream 106587 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00029724 lncRNA downstream 115936 30841639 ~ 30843233 (+) True XLOC_014130
TCONS_00029725 lncRNA downstream 243309 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00029957 lncRNA downstream 413124 31138827 ~ 31153090 (+) True XLOC_014137
TCONS_00028147 mRNA upstream 40122 30662529 ~ 30684874 (+) True XLOC_014126
TCONS_00028146 mRNA upstream 41318 30633453 ~ 30683678 (+) False XLOC_014126
TCONS_00028141 mRNA upstream 208316 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028140 mRNA upstream 256762 30450125 ~ 30468234 (+) True XLOC_014121
TCONS_00028139 mRNA upstream 296095 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028148 mRNA downstream 142142 30867845 ~ 30884054 (+) False XLOC_014131
TCONS_00028150 mRNA downstream 159003 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028151 mRNA downstream 159257 30884960 ~ 30891182 (+) False XLOC_014132
TCONS_00028152 mRNA downstream 159280 30884983 ~ 30895273 (+) False XLOC_014132
TCONS_00028154 mRNA downstream 159285 30884988 ~ 30891369 (+) False XLOC_014132
TCONS_00028145 other upstream 93936 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028142 other upstream 206423 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028136 other upstream 864662 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028134 other upstream 864790 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028123 other upstream 1404113 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028149 other downstream 154085 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028153 other downstream 159281 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 159609 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028165 other downstream 616320 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028174 other downstream 862228 31587931 ~ 31590491 (+) True XLOC_014142