RNA id: TU132289


Basic Information

Item Value
RNA id TU132289
length 1630
lncRNA type read_through
GC content 0.41
exon number 2
gene id G115198
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14166664 ~ 14168403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACGCTGCCCCTTCACTCCTGGCTCTCCTATGAGGCCGCTGTTGCCCTGCAAGAGAACCCACCATCAATAGGTTAGACATTAGAGAAGAGAATCTAGTAAGAGTAGGATATTGGGGACATAGGAGAAGTATATTGGTGACAGGAGAATGACATTAGTGACATAGGAGTAGTATACTGGTGATGTAGGAGTAGTATATTGGTGACATATGATAACGATATTAGTGATATAGGAGAAGTAAACTGGTGACATAGGAGTACTATGCTGGTGACATGGAAGTAGTATATTGGTGACATAGGAGTAGTGTATTGGTGACATAGGAGGACGAAATTAGTGACATAAGAGCAGTATACTGGTGACATAAGAGCAGTATACTGGTGACATAGGAGTAGTATACTGGTGACATGGAAGTAGCATATTGGTGACATGGAAGTAGCATATTGGTGACATGGAAGTAGCATATTGGTGACATGGAAGTACTATACTGGTGACATGGAAGTAGCATATTGGTGACATAGGAGTAGCATATTGGTGACATAGGAGTAGTATATTGGTGACATGGAAGTAGTATATTGGTGACATAGGAGAACGATATTAATGACATAGGAGTAGTATATTGGTGACATAGGAGAACGATATTAATGACATAGGAGTAGTATACTGGTGACATGGAAGTAGCATATTGGTGACATAGGAGTAGTATATTGGTGACATAGGAGAACGATATTAATGACATAGGAGTAGTATACTGGTGACATGGAAGTAGTATACTGGTGACATGGAAGTAGTATATTGGTGACATAGGAGTAGCGTATTATTGACATAGCAGTAGTATATCAGTGACCTAGGAGTAGTATATTGGCGAAATATATGTAGAATATGAGAAAATGTGTTTACTGGTCTTCCTgggtttcctctctctcctgcagctCCAGCTGTTCCAATCAGACCCTGTTCACCATCAACCCCATCAAGGCCATGGTCTCCGTCATCACCCTGCCATGGTAATGTGCACACTGATTCACAACACACTCAACAACAGCAGACGTTTACATCCACACAATGAAAAAAAGAAAGCACCATGGTAAACCTGGTTTTCCATCGGTTAAGACAAAATACCTAGTATACTGCACATAGAAAGGtttctactgtacactacatttAGCTGTGTGAACGTGGTATCAACAGCTTCATTCACTTACCCTGTCCCCTCTGTAGGCTCTTGAGCCCTGTAAAAAAACAGAGATCAGATTAGATGGGATTATTTTAGACTGGTAACTCCAGCGCATCATGGTTCAGAGATCAAATGGGATTATTTTAGACTGGTAACTCCAGCGCATCATGGTTCAGAGATCAAATGGGATTATTTTAGACCGGTAACTCCAGCGCATCATGGTTCAGAGATCAGATGGGATTATTTTAGACTGGTAACTCCAGCGCATCATGGTTCAGAGATCAGATGGGATTATTTTAGACAGGTAACTCCAGCGCGTCATGGTTCAGAGATCAGATGGGATTATTTTAGACTGGTAACTCCAGCGCATCATGGTTCAGAGATCAGATGGGATTATTTTAGACTGGTAACTCCAGCGCGTCATGGTTCAGAGATCAGATTAGATGGGATTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132229 lncRNA upstream 5424 14051656 ~ 14161240 (+) True G115155
TU132141 lncRNA upstream 47568 14108301 ~ 14119096 (+) True G115086
TU132227 lncRNA upstream 128917 14037240 ~ 14037747 (+) True G115153
TU132198 lncRNA upstream 219876 13944714 ~ 13946788 (+) True G115129
TU132194 lncRNA upstream 221307 13944447 ~ 13945357 (+) False G115129
TU132307 lncRNA downstream 30850 14199253 ~ 14202942 (+) True G115216
TU132344 lncRNA downstream 124356 14292759 ~ 14297388 (+) True G115252
TU132136 lncRNA downstream 149145 14317548 ~ 14318010 (+) True G115081
TU132354 lncRNA downstream 166754 14335157 ~ 14335397 (+) True G115262
TU132355 lncRNA downstream 167308 14335711 ~ 14335955 (+) True G115263
XM_036961858.1 mRNA upstream 31618 14087019 ~ 14135046 (+) False LOC110535435
XM_036961867.1 mRNA upstream 31618 14087019 ~ 14135046 (+) False LOC110535435
XM_036961871.1 mRNA upstream 31618 14087047 ~ 14135046 (+) False LOC110535435
XM_036961862.1 mRNA upstream 31618 14089203 ~ 14135046 (+) True LOC110535435
XM_036961829.1 mRNA upstream 123021 14027970 ~ 14043643 (+) True LOC110534090
XM_036962053.1 mRNA downstream 44011 14212414 ~ 14230202 (+) False LOC110513267
XM_036962061.1 mRNA downstream 52023 14220426 ~ 14230202 (+) True LOC110513267
XM_036961838.1 mRNA downstream 71829 14240232 ~ 14316219 (+) False LOC110535510
XM_036961851.1 mRNA downstream 76915 14245318 ~ 14314631 (+) False LOC110535510
XM_036961843.1 mRNA downstream 93647 14262050 ~ 14314631 (+) True LOC110535510
TU132281 other upstream 22397 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 203852 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 457290 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 542699 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 1201734 12949360 ~ 12964930 (+) True G114323
TU132280 other downstream 66111 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 237641 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 388052 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 585220 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 692317 14860720 ~ 14865283 (+) False si:ch211-197h24.6

Expression Profile